Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 1,335,153 Δ593 bp 100% [ymiA]–yciX [ymiA], yciX

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1335153 1335745 593 120 [1] [0] 119 [ymiA]–yciX [ymiA],yciX

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13351521 (0.010)107 (1.160) 84/260 NT 99.5% coding (29/165 nt) ymiA uncharacterized protein
?NC_000913 1335746 = 0 (0.000)intergenic (+288/‑85) yciX/acnA uncharacterized protein/aconitate hydratase 1; aconitase A

Only 100 of 120 total aligned reads displayed.

TTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTCGG  >  NC_000913/1335004‑1335298
                                                                                                                                                    |                                                                                                                                                  
tttAAGGTCAAAATCTTGAATTATTCACTGGAGACGATTCGTAACTTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAg                                                                                                                                                    <  2:116803/149‑1 (MQ=255)
   cAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaa                                                                                                                                                  <  2:189222‑M1/148‑3 (MQ=255)
    aGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTAAATGAGaaat                                                                                                                                                <  2:385594‑M1/149‑5 (MQ=255)
     ggTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatc                                                                                                                                               <  4:303018‑M1/149‑6 (MQ=255)
      gTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcg                                                                                                                                              >  2:369009‑M1/1‑143 (MQ=255)
       tCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgt                                                                                                                                             <  3:150851‑M1/149‑8 (MQ=255)
         aaaaGATTGAATTATTCACTGGAGACGATTCGTAAATTCTCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATAGTTCAACGTCTAGCTGATAAGTGATGGCGATTATATTAGaaatcttta                                                                                                                                           >  6:109353‑M1/1‑140 (MQ=255)
          aaaGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttac                                                                                                                                          >  3:226593‑M1/1‑139 (MQ=255)
             gATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTATTTAGGATTTGTCTCATCGTATCATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgc                                                                                                                                        >  8:339036‑M1/1‑136 (MQ=255)
               ttGAATTATTCACTGGATACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgat                                                                                                                                     <  5:376743‑M1/149‑16 (MQ=255)
                tGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatg                                                                                                                                    >  8:135367‑M1/1‑133 (MQ=255)
                  aaTTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgc                                                                                                                                        <  5:249430‑M1/143‑13 (MQ=255)
                   attattCACTGGAGACGATTCTTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgttt                                                                                                                                 <  1:354513‑M1/149‑20 (MQ=255)
                   attattCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgttt                                                                                                                                 <  3:28841‑M1/149‑20 (MQ=255)
                      attCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtg                                                                                                                              >  1:208936‑M1/1‑127 (MQ=255)
                      attCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgt                                                                                                                               <  7:386875‑M1/148‑22 (MQ=255)
                          aCTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttat                                                                                                                          <  1:167355‑M1/149‑27 (MQ=255)
                          aCTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttat                                                                                                                          <  6:321121‑M1/149‑27 (MQ=255)
                          aCTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttat                                                                                                                          >  6:302168‑M1/1‑123 (MQ=255)
                          aCTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTAATTGAGaaatcgttacgctatgtttgggttat                                                                                                                          >  6:110465‑M1/1‑123 (MQ=255)
                            tGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatct                                                                                                                        >  5:165745‑M1/1‑121 (MQ=255)
                              gagaCGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctt                                                                                                                       >  3:204672‑M1/1‑119 (MQ=255)
                               agaCGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatcttt                                                                                                                      >  1:219583‑M1/1‑118 (MQ=255)
                                    aTTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatatt                                                                                                                <  4:24060‑M1/149‑37 (MQ=255)
                                             ttCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTTCTGATAAGTGATGGAGATTATATGAGaaatcgttacgctatgtttgtgttatctttaatattcaccctgaa                                                                                                       <  5:109353‑M1/149‑46 (MQ=255)
                                                  tGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaa                                                                                                  >  4:258249‑M1/1‑99 (MQ=255)
                                                    gATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaat                                                                                                 <  7:126668‑M1/148‑52 (MQ=255)
                                                    gATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaat                                                                                                 >  8:360538‑M1/1‑97 (MQ=255)
                                                      tttttGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcag                                                                                              <  4:206662‑M1/149‑55 (MQ=255)
                                                         ttGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggc                                                                                           >  1:213648‑M1/1‑92 (MQ=255)
                                                           gACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGGTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggctt                                                                                         >  5:303537‑M1/1‑90 (MQ=255)
                                                             cTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcg                                                                                       >  2:349555‑M1/1‑88 (MQ=255)
                                                              tAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaaga                                                                                                     <  6:26297‑M1/134‑48 (MQ=255)
                                                              tAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaaga                                                                                                     >  5:26297‑M1/1‑87 (MQ=255)
                                                                aaGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATAGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCCATGCCTTCTGGAAATCAGGACCCCCGCCGCGATCCAGAATTAAAACGTAAAGCctgg                                                                                    >  6:175574/1‑149 (MQ=255)
                                                                   tttATTTTGGTTTTGTCTGATCGTATGATTAATTAAACCAATCGTTCAAAGTCTTGCTGTTAAGTGATTGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccc                                                                                 <  4:204672‑M1/149‑68 (MQ=255)
                                                                        ttAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtca                                                                            >  6:93245‑M1/1‑77 (MQ=255)
                                                                        ttAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcag                                                                                              >  3:52716‑M1/1‑77 (MQ=255)
                                                                        ttAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcag                                                                                              <  4:52716‑M1/131‑55 (MQ=255)
                                                                         tAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtca                                                                            <  4:226593‑M1/148‑73 (MQ=255)
                                                                            gATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcatt                                                                          >  4:154278‑M1/1‑73 (MQ=255)
                                                                            gATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaacagaatcagggcttcgcaaccctgtcattaa                                                                        <  2:208936‑M1/149‑77 (MQ=255)
                                                                             aTTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaag                                                                       <  1:369009‑M1/149‑78 (MQ=255)
                                                                             aTTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaag                                                                       <  6:165745‑M1/149‑78 (MQ=255)
                                                                             aTTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaag                                                                       <  2:213648‑M1/149‑78 (MQ=255)
                                                                                tGTCTCATCGTCTGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGCGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagcgaatcagggcttcgcaaccctgtcattaagga                                                                     <  6:760‑M1/148‑80 (MQ=255)
                                                                                 gTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggag                                                                    <  2:369187‑M1/148‑81 (MQ=255)
                                                                                  tctcATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaacc                                                                                  <  3:334595‑M1/133‑67 (MQ=255)
                                                                                  tctcATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaacc                                                                                  >  4:334595‑M1/1‑67 (MQ=255)
                                                                                   ctcATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggag                                                                 >  3:168011‑M1/1‑66 (MQ=255)
                                                                                    tcATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggagga                                                                  <  4:54309‑M1/147‑83 (MQ=255)
                                                                                    tcATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggagga                                                                  >  3:54309‑M1/1‑65 (MQ=255)
                                                                                      aTCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagcta                                                              >  3:48961‑M1/1‑63 (MQ=255)
                                                                                      aTCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagct                                                               <  4:74983‑M1/148‑86 (MQ=255)
                                                                                      aTCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagct                                                               <  5:65836‑M1/148‑86 (MQ=255)
                                                                                      aTCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagc                                                                <  5:93245‑M1/147‑85 (MQ=255)
                                                                                      aTCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaa                                                                                                       <  2:256237‑M1/108‑46 (MQ=255)
                                                                                      aTCGAATGATTAATAACAACAATCGTTCAACTTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttagcaaccctgtcattaaggaggag                                                                 <  6:303537‑M1/146‑84 (MQ=255)
                                                                                         gTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctat                                                             <  5:26976‑M1/147‑88 (MQ=255)
                                                                                         gTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctat                                                             >  6:26976‑M1/1‑60 (MQ=255)
                                                                                         gTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcacactgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgt                                                           >  6:158930‑M1/1‑60 (MQ=255)
                                                                                            tGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgt                                                        >  4:85489‑M1/1‑57 (MQ=255)
                                                                                            tGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgt                                                        <  5:302168‑M1/149‑93 (MQ=255)
                                                                                              attaattaCACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtc                                                       <  2:219583‑M1/148‑94 (MQ=255)
                                                                                               ttaattaCACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaa                                                     <  4:50711‑M1/149‑96 (MQ=255)
                                                                                                   ttaCACCAATCGTTCAAGTTCTTGCTGATTAGTGATTGCGATTATATGAGaaatcgttacgcgatgtttgtgttttctttaatattcaccctgatgagaatctgggcttcgcatccctgtcattaaggaggagctatgtcgtcaaccct                                                 <  8:326065‑M1/149‑100 (MQ=255)
                                                                                                      cacCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctac                                               <  1:289641‑M1/148‑102 (MQ=255)
                                                                                                       acCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacga                                             <  7:135367‑M1/149‑104 (MQ=255)
                                                                                                          aaTCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgag                                            >  1:210381‑M1/1‑43 (MQ=255)
                                                                                                            tCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagc                                        <  8:393030‑M1/149‑109 (MQ=255)
                                                                                                              gTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagcca                                      <  7:125142‑M1/149‑111 (MQ=255)
                                                                                                                 cAACGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagt                                    <  7:436215‑M1/148‑113 (MQ=255)
                                                                                                                  aaCGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaa                                  <  5:158930‑M1/149‑115 (MQ=255)
                                                                                                                  aaCGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaa                                  <  6:21837‑M1/149‑115 (MQ=255)
                                                                                                                  aaCGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagt                                    >  7:394484‑M1/1‑35 (MQ=255)
                                                                                                                  aaCGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagt                                    >  1:66128‑M1/1‑35 (MQ=255)
                                                                                                                  aaCGTCTTGCTGATAAGTGATGCCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagta                                   <  2:224942‑M1/148‑114 (MQ=255)
                                                                                                                   aCGTCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaag                                 <  7:360538‑M1/149‑116 (MQ=255)
                                                                                                                      tCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttat                                                                                                                          <  4:369380‑M1/57‑27 (MQ=255)
                                                                                                                      tCTTGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttat                                                                                                                          >  3:369380‑M1/1‑31 (MQ=255)
                                                                                                                        ttGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcatt                                                                          <  8:189691‑M1/103‑75 (MQ=255)
                                                                                                                        ttGCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcatt                                                                          >  7:189691‑M1/1‑29 (MQ=255)
                                                                                                                        ttGCCGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggac                              >  8:336666‑M1/1‑29 (MQ=255)
                                                                                                                        ttGCCGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggac                              <  7:336666‑M1/147‑119 (MQ=255)
                                                                                                                          gCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgt                                                                              >  4:337027‑M1/1‑27 (MQ=255)
                                                                                                                          gCTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgt                                                                              <  3:337027‑M1/97‑71 (MQ=255)
                                                                                                                           cTGATAAGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgtcatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgtt                         >  2:160494‑M1/1‑26 (MQ=255)
                                                                                                                                 aGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggc                   <  3:85489‑M1/149‑130 (MQ=255)
                                                                                                                                 aGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggc                   <  5:151655‑M1/149‑130 (MQ=255)
                                                                                                                                 aGTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcagg                    <  3:154278‑M1/148‑129 (MQ=255)
                                                                                                                                  gTGATGGCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggc                   >  2:236000‑M1/1‑19 (MQ=255)
                                                                                                                                        gCGATTATATGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaaga             <  1:349555‑M1/148‑136 (MQ=255)
                                                                                                                                          gtttatATGAGtaatcgttacgggatgtttgtgttatctttaatattcaccctgaagagtatcagggcttcgcaacactgtcattaaggaggagctatgtcgtctaccctacgagaagccagtaagtacacgttgcaggccaaagataa          <  2:284747‑M1/147‑139 (MQ=255)
                                                                                                                                              atatGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaagg                                                                      <  8:418831‑M1/85‑79 (MQ=255)
                                                                                                                                               tatGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagt                                    <  1:269017‑M1/118‑113 (MQ=255)
                                                                                                                                                 tGAGaaatcgttacgcgatttttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataaaacttac   <  7:339036‑M1/149‑146 (MQ=255)
                                                                                                                                                 tGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataaaacttac   >  6:188221‑M1/1‑4 (MQ=255)
                                                                                                                                                 tGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacac                            <  4:366155‑M1/124‑121 (MQ=255)
                                                                                                                                                 tGAGaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacac                            >  3:366155‑M1/1‑4 (MQ=255)
                                                                                                                                                   agaaatcgttacgcgatgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataaaacttacc  <  5:188221‑M1/148‑147 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
TTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTCGG  >  NC_000913/1335004‑1335298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑