mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 45.1% | 41.7 / 118.2 | 91 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 696863 = | 31 (0.350) | 28 (0.340) +GAAGAAACAATC |
7/258 | 5.2 | 41.0% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | = 697134 | 57 (0.640) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | 4542682 = | 61 (0.680) | 5 (0.060) | 5/264 | 5.9 | 6.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 90 (1.070) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4023516 = | 125 (1.390) | 5 (0.060) | 5/264 | 5.9 | 4.3% | intergenic (+4/‑38) | tatC/tatD | TatABCE protein translocation system subunit/quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase |
| ? | NC_000913 | 4023538 = | 106 (1.260) | intergenic (+26/‑16) | tatC/tatD | TatABCE protein translocation system subunit/quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase | |||||
| * | ? | NC_000913 | 4106361 = | 69 (0.770) | 5 (0.060) | 5/266 | 6.0 | 7.3% | intergenic (+41/‑108) | cpxP/fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| ? | NC_000913 | 4106380 = | 61 (0.720) | intergenic (+60/‑89) | cpxP/fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter | |||||
| * | ? | NC_000913 | = 4341795 | 114 (1.270) | 4 (0.050) | 4/246 | 6.1 | 3.9% | intergenic (‑167/‑116) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | = 4341815 | 99 (1.270) | intergenic (‑187/‑96) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 2304952 | NA (NA) | 7 (0.080) +C |
5/280 | 6.1 | NA | noncoding (536/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305105 | NA (NA) | intergenic (+712/+3) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain | |||||
| * | ? | NC_000913 | = 275149 | NA (NA) | 5 (0.060) | 5/280 | 6.1 | 6.0% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 451381 = | 79 (0.890) | coding (230/948 nt) | cyoA | cytochrome o ubiquinol oxidase subunit II | |||||
| * | ? | NC_000913 | = 3537321 | 107 (1.190) | 4 (0.050) | 4/264 | 6.3 | 4.0% | intergenic (+33/‑64) | greB/yhgF | transcript cleavage factor/putative transcriptional accessory protein |
| ? | NC_000913 | = 3537325 | 93 (1.110) | intergenic (+37/‑60) | greB/yhgF | transcript cleavage factor/putative transcriptional accessory protein | |||||
| * | ? | NC_000913 | 2691519 = | 75 (0.840) | 4 (0.050) | 4/268 | 6.4 | 5.2% | intergenic (‑179/+137) | glmY/purL | sRNA activator of glmS mRNA, glmZ processing antagonist/phosphoribosylformyl‑glycineamide synthetase |
| ? | NC_000913 | 2691539 = | 75 (0.880) | intergenic (‑199/+117) | glmY/purL | sRNA activator of glmS mRNA, glmZ processing antagonist/phosphoribosylformyl‑glycineamide synthetase | |||||
| * | ? | NC_000913 | 1097487 = | 39 (0.430) | 4 (0.050) | 4/270 | 6.4 | 6.3% | intergenic (+658/+78) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097595 = | 82 (0.950) | noncoding (58/88 nt) | serX | tRNA‑Ser | |||||