breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT45.1% 41.7 / 118.2 91intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 30 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 696863 =31 (0.350)28 (0.340)
+GAAGAAACAATC
7/258 5.2 41.0% intergenic (‑33/+2) glnW/glnU tRNA‑Gln/tRNA‑Gln
?NC_000913 = 697134 57 (0.640)intergenic (‑1/+379) metT/asnB tRNA‑Met/asparagine synthetase B
* ? NC_000913 4542682 =61 (0.680)5 (0.060) 5/264 5.9 6.4% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 90 (1.070)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4023516 =125 (1.390)5 (0.060) 5/264 5.9 4.3% intergenic (+4/‑38) tatC/tatD TatABCE protein translocation system subunit/quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase
?NC_000913 4023538 = 106 (1.260)intergenic (+26/‑16) tatC/tatD TatABCE protein translocation system subunit/quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase
* ? NC_000913 4106361 =69 (0.770)5 (0.060) 5/266 6.0 7.3% intergenic (+41/‑108) cpxP/fieF inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter
?NC_000913 4106380 = 61 (0.720)intergenic (+60/‑89) cpxP/fieF inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter
* ? NC_000913 = 4341795114 (1.270)4 (0.050) 4/246 6.1 3.9% intergenic (‑167/‑116) melR/melA melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
?NC_000913 = 4341815 99 (1.270)intergenic (‑187/‑96) melR/melA melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
* ? NC_000913 = 2304952NA (NA)7 (0.080)
+C
5/280 6.1 NA noncoding (536/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2305105 NA (NA)intergenic (+712/+3) eco/mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
* ? NC_000913 = 275149NA (NA)5 (0.060) 5/280 6.1 6.0% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 451381 = 79 (0.890)coding (230/948 nt) cyoA cytochrome o ubiquinol oxidase subunit II
* ? NC_000913 = 3537321107 (1.190)4 (0.050) 4/264 6.3 4.0% intergenic (+33/‑64) greB/yhgF transcript cleavage factor/putative transcriptional accessory protein
?NC_000913 = 3537325 93 (1.110)intergenic (+37/‑60) greB/yhgF transcript cleavage factor/putative transcriptional accessory protein
* ? NC_000913 2691519 =75 (0.840)4 (0.050) 4/268 6.4 5.2% intergenic (‑179/+137) glmY/purL sRNA activator of glmS mRNA, glmZ processing antagonist/phosphoribosylformyl‑glycineamide synthetase
?NC_000913 2691539 = 75 (0.880)intergenic (‑199/+117) glmY/purL sRNA activator of glmS mRNA, glmZ processing antagonist/phosphoribosylformyl‑glycineamide synthetase
* ? NC_000913 1097487 =39 (0.430)4 (0.050) 4/270 6.4 6.3% intergenic (+658/+78) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 1097595 = 82 (0.950)noncoding (58/88 nt) serX tRNA‑Ser