New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 88827424 (0.720)8 (0.250) 8/250 2.4 25.4% coding (1546/1686 nt) ybjL putative transporter
?NC_000913 = 888284 24 (0.750)coding (1536/1686 nt) ybjL putative transporter

TTCAGTTTTATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCC  >  NC_000913/888127‑888415
                                                                                                                                                   |                                                                                                                                             
ttCAGTTTTATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGgcgcg                                                                                                                                              >  5:92760/1‑149 (MQ=255)
   aGTTTTATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAg                                                                                                                                           <  2:151177/149‑1 (MQ=255)
        tATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACg                                                                                                                                      >  6:40800/1‑149 (MQ=255)
                        aTACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTgc                                                                                                                       <  1:112192/148‑1 (MQ=255)
                        aTACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTgc                                                                                                                       >  2:112192/1‑148 (MQ=255)
                            cATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCg                                                                                                                   >  7:137978/1‑148 (MQ=255)
                                  gatgatTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAacaaca                                                                                                            <  8:137978/149‑1 (MQ=255)
                                             cTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTc                                                                                                 <  3:21017/149‑1 (MQ=255)
                                                ccAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCAtt                                                                                              <  6:92760/149‑1 (MQ=255)
                                                 cAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTc                                                                                             <  5:40800/149‑1 (MQ=255)
                                                        agcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTc                                                                                             <  6:41792/142‑1 (MQ=255)
                                                        agcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTc                                                                                             >  5:41792/1‑142 (MQ=255)
                                                         gcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccg                                                                                                                               <  1:158251‑M1/107‑17 (MQ=255)
                                                         gcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccg                                                                                                                               >  2:158251‑M1/1‑91 (MQ=255)
                                                         gcagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACa                                                                                     >  2:66752/1‑149 (MQ=255)
                                                          cagGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACa                                                                                     >  6:49390/1‑148 (MQ=255)
                                                               cGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccggcaatggagatcatcagtgatacagctcgcagtaa                                                                                            <  1:64106‑M1/136‑52 (MQ=255)
                                                               cGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccggcaatggagatcatcagtgatacagctcgcagtaa                                                                                            >  2:64106‑M1/1‑85 (MQ=255)
                                                               cGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCa                                                                               <  1:138568/149‑1 (MQ=255)
                                                                    gCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTc                                                                                                 <  2:8020/126‑1 (MQ=255)
                                                                    gCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTc                                                                                                 >  1:8020/1‑126 (MQ=255)
                                                                            aTAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgc                                                                                                                                   >  1:167930‑M1/1‑72 (MQ=255)
                                                                            aTAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgc                                                                                                                                   <  2:167930‑M1/84‑13 (MQ=255)
                                                                               ggTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGa                                                               <  1:66752/149‑1 (MQ=255)
                                                                                   cccGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAAc                                                           >  6:57460/1‑149 (MQ=255)
                                                                                        aTAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACgg                                                      <  5:57460/149‑1 (MQ=255)
                                                                                                         tGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCAc                                                  >  5:42840/1‑136 (MQ=255)
                                                                                                         tGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCAc                                                  <  6:42840/136‑1 (MQ=255)
                                                                                                           ttACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctatgcaatcgccaacg                                                <  1:64106‑M2/136‑86 (MQ=255)
                                                                                                           ttACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctatgcaatcgccaacg                                                >  2:64106‑M2/1‑51 (MQ=255)
                                                                                                              cTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATcc                                >  1:56729/1‑149 (MQ=255)
                                                                                                                        tATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccggcaat                                                                                                                          >  7:109066‑M1/1‑28 (MQ=255)
                                                                                                                        tATCACTGATGATCTCCATTGCCGGCGCacgtacctgcgcgccggcaat                                                                                                                          <  8:109066‑M1/49‑22 (MQ=255)
                                                                                                                                         aTTGCCGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgata                                                                                                         >  7:109066‑M2/1‑21 (MQ=255)
                                                                                                                                         aTTGCCGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgata                                                                                                         <  8:109066‑M2/49‑29 (MQ=255)
                                                                                                                                             ccGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGcc  <  5:49390/148‑1 (MQ=255)
                                                                                                                                              cGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctatgcaatcgccaacgtcctgc                                          >  2:158251‑M2/1‑16 (MQ=255)
                                                                                                                                              cGGCGCGCAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctatgcaatcgccaacgtcctgc                                          <  1:158251‑M2/107‑92 (MQ=255)
                                                                                                                                                  gcgcAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctat                                                             >  1:167930‑M2/1‑12 (MQ=255)
                                                                                                                                                  gcgcAGGTACGTgcgccggcaatggagatcatcagtgatacagctcgcagtaacatcccggcgctgggctatgcgggcacctat                                                             <  2:167930‑M2/84‑73 (MQ=255)
                                                                                                                                                   |                                                                                                                                             
TTCAGTTTTATCCTAATCCTGGCCATACCATGACGATGATTGTCCCTGCCAGCGTCAGCAGGACGTTGGCGATTGCATAGGTGCCCGCATAGCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCC  >  NC_000913/888127‑888415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.