New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2078529	29 (0.870)	7 (0.230)	7/240	2.6	19.8%	intergenic (+422/+20)	yeeW/yoeD	CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
	?	NC_000913	= 2078541	30 (0.980)					intergenic (+434/+8)	yeeW/yoeD	CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
Rejected: Frequency below/above cutoff threshold.

ACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTT  >  NC_000913/2078398‑2078682                                                                                                                                                |                                                                                                                                              aCCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTAttgac                                                                                                                                          <  2:110619‑M2/149‑6 (MQ=255)                 gCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGt                                                                                                                            >  1:1270/1‑147 (MQ=255)                    ttATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGaa                                                                                                                       <  3:103348/149‑1 (MQ=255)                         gCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACAGTATTGACGCTTATTTATTGGTGAGAACTACg                                                                                                                  >  3:121066/1‑149 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTAttgac                                                                                                                                          >  1:124554‑M2/1‑113 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTAttgac                                                                                                                                          <  2:124554‑M2/118‑6 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTgg                                                                                                                             >  5:7221/1‑131 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTgg                                                                                                                             <  6:7221/131‑1 (MQ=255)                                tAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCAt                                                                                                            <  1:110619/148‑1 (MQ=255)                                   cGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCa                                                                                                        <  2:1270/149‑1 (MQ=255)                                              gACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTc                                                                                              <  6:147839/148‑1 (MQ=255)                                              gACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTc                                                                                              <  4:121066/148‑1 (MQ=255)                                                ccTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCaa                                                                                            >  6:126245/1‑148 (MQ=255)                                                 cTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAaca                                                                                          >  8:102967/1‑149 (MQ=255)                                                   gACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACg                                                                                        >  1:78425/1‑149 (MQ=255)                                                     cAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACgg                                                                                       <  2:78425/148‑1 (MQ=255)                                                       aaaaaTGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTg                                                                                    <  7:102967/149‑1 (MQ=255)                                                        aaaaTGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTg                                                                                    >  1:56083/1‑148 (MQ=255)                                                              aaTTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGc                                                                              <  7:88067/148‑1 (MQ=255)                                                              aaTTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGc                                                                              >  8:88067/1‑148 (MQ=255)                                                                 tCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAg                                                                                                       <  4:7415/120‑1 (MQ=255)                                                                 tCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAg                                                                                                       >  3:7415/1‑120 (MQ=255)                                                                   cAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGTAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTcc                                                                        >  5:58389/1‑149 (MQ=255)                                                                   cAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTAttga                                                                                                                                           >  2:21528‑M2/1‑78 (MQ=255)                                                                                   gTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGTAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGaa                                                        <  6:58389/149‑1 (MQ=255)                                                                                       gAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATg                                                    >  5:43430/1‑149 (MQ=255)                                                                                          cAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATCCCGGCAGTATGCTCAGAATATGgcg                                                 <  2:56083/149‑1 (MQ=255)                                                                                             aaaaaTCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCttatttat                                                                                                                                >  5:160055/1‑67 (MQ=255)                                                                                             aaaaaTCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCttatttat                                                                                                                                <  6:160055/67‑1 (MQ=255)                                                                                                                 cGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATAc                          <  5:126245/149‑1 (MQ=255)                                                                                                                   gATTAAAGTAAGCGTCAACGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaattcattttttgtcaggtcaatgctaatcgttaaaacggccataacgcac                         <  6:21276‑M2/148‑119 (MQ=255)                                                                                                                     ttAAAGTAATCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGtt                      <  6:43430/149‑1 (MQ=255)                                                                                                                       aaaGTAAGCGTCAACGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaattcattttttgtcaggtcaatgctaatcgttaaaacggccataacgcacctcca                    <  2:168692‑M2/149‑124 (MQ=255)                                                                                                                         aGTAAGCGTCAACGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaat                                                                         <  8:112429‑M2/94‑71 (MQ=255)                                                                                                                         aGTAAGCGTCAACGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaat                                                                         >  7:112429‑M2/1‑24 (MQ=255)                                                                                                                             aGCGTCAACGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaattcattttttgtcaggtcaatgctaatcgttaaaacggccataacgcacctccactggaa              >  5:21276‑M2/1‑20 (MQ=255)                                                                                                                                    aCGGAGCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaattcattttttgtcaggtcaatgctaatcgttaaaacggccataacgcacctccactggaaggtttat       <  5:62164‑M2/149‑137 (MQ=255)                                                                                                                                         gCACCGTAttgacgcttactttaatccgttttctgagcttagatttttctgttcctacccagaccgtggatttggaattcattttttgtcaggtcaatgctaatcgttaaaacggccataacgcacctccactggaaggtttatcagta  >  6:62164‑M2/1‑8 (MQ=255)                                                                                                                                            ccGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATg                                                    >  2:75142/1‑96 (MQ=255)                                                                                                                                            ccGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATg                                                    <  1:75142/96‑1 (MQ=255)                                                                                                                                               tATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGAt                                >  8:8264/1‑113 (MQ=255)                                                                                                                                                |                                                                                                                                              ACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTT  >  NC_000913/2078398‑2078682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.