New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 60104456 (0.620)3 (0.040) 3/226 NT 5.2% coding (2331/3144 nt) cusA copper/silver efflux system, membrane component
?NC_000913 = 601061 57 (0.680)coding (2348/3144 nt) cusA copper/silver efflux system, membrane component

TAACCGTGAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATA  >  NC_000913/600897‑601189
                                                                                                                                                   |                                                                                                                                                 
tAACCGTGAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGC                                                                                                                                                   >  1:247946‑M1/1‑148 (MQ=255)
   ccGTGATAAAGCCGCACGTTACGTTATGACGTTGGCGGATGTGCAGTTGTTTGTGAGTTCTGTGGTGGGCGGGGCTATGGTTAGCGAAACGGTGGTAGGGATTGCCCGTTATCCAATTAATCTGATTTATCCGCAAAGCTGGCGGGAt                                                                                                                                                <  8:260173/148‑1 (MQ=255)
   ccGTGAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGAt                                                                                                                                                <  5:327962/148‑1 (MQ=255)
    cGTGAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGAt                                                                                                                                                <  1:352131/147‑1 (MQ=255)
     gTGAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAg                                                                                                                                              >  8:213982/1‑148 (MQ=255)
      tGAAAAAGCCGCACGTTAACGTATGACGGTGGCGGATGAGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACCGTGGAAGGGAATGCACGTTATCCAATTAATCTGCGTTATACGCAAAGCTGGCGCGATAGt                                                                                                                                             >  6:303284/1‑148 (MQ=255)
                           tATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg                                                                                                                        <  2:379790/148‑1 (MQ=255)
                                             gCAGTTGATTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACTTTGGAAGCGATTGCCAGTTATACAATTAATCTGCGTTATCCGCAAAGCTGGCGCagtgcctgcggactatcgcgccagctttgcg                                                                                                                    <  4:148088‑M1/134‑32 (MQ=255)
                                              cAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCagtgcctgcggactatcgagacagatttgcgg                                                                                                                   >  3:148088‑M1/1‑102 (MQ=255)
                                               aGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATg                                                                                                      >  7:185071/1‑146 (MQ=255)
                                                 ttgtttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGc                                                                                                                                         <  5:308550/109‑1 (MQ=255)
                                                 ttgtttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGc                                                                                                                                         >  6:308550/1‑109 (MQ=255)
                                                  tgtttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGAt                                                                                                                                                <  4:334848/101‑1 (MQ=255)
                                                  tgtttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGAt                                                                                                                                                >  3:334848/1‑101 (MQ=255)
                                                    tttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGTAAGGGATTGCCCGTTATACAATTAATCTGAGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAGCCTGACGCCGATGAagcag                                                                                                >  2:326935/1‑147 (MQ=255)
                                                        tgACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcag                                                                                                >  1:60588/1‑143 (MQ=255)
                                                        tgACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcag                                                                                                <  2:60588/143‑1 (MQ=255)
                                                          aCTTCTGCGGTGGGCGGGGCGATGGTTGGCGAATCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgg                                                                                          <  4:46167‑M1/147‑58 (MQ=255)
                                                           cTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGc                                                                                                                                         >  2:301838/1‑99 (MQ=255)
                                                           cTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGc                                                                                                                                         <  1:301838/99‑1 (MQ=255)
                                                           cTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc                                                                                        <  7:213982/148‑1 (MQ=255)
                                                                gCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCAGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTgg                                                                                   >  4:321738/1‑148 (MQ=255)
                                                                 cGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTg                                                                                    <  7:215275/146‑1 (MQ=255)
                                                                          gggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCATGCCGCCGATGAAGCAGCAAATCACCCTGGCCGCCGTGGc                                                                         >  4:254659/1‑148 (MQ=255)
                                                                           ggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGcc                                                                        <  3:321738/148‑1 (MQ=255)
                                                                                  gTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACAtt                                                                  >  1:106747/1‑147 (MQ=255)
                                                                                   ttGGCGTAACGGTTGAAGGGATTGCCCGTTTTCCAATTAATCTGCGTTTTCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                <  8:185071/148‑1 (MQ=255)
                                                                                   ttGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                <  2:106747/148‑1 (MQ=255)
                                                                                   tgggggAATCGGTGTTAGGGATTGCCCTTTATCCAATTAATCTTCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAGCCTGACGCCGATGTAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                <  5:303284/143‑1 (MQ=255)
                                                                                         aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTg                                                                                                               <  6:398513/95‑1 (MQ=255)
                                                                                         aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTg                                                                                                               >  5:398513/1‑95 (MQ=255)
                                                                                         aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAcc                                                                                       >  2:370477/1‑119 (MQ=255)
                                                                                         aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAcc                                                                                       <  1:370477/119‑1 (MQ=255)
                                                                                          aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTctct                                                         <  2:247946/148‑1 (MQ=255)
                                                                                                           cccGTTATACAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCCCTGCGCCAGCGGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGGCGATGCt                                        <  1:326935/148‑1 (MQ=255)
                                                                                                            ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagctttgcggataacgcagattaattggataacgggcaatcccttccaccgattcgccaaccatcgccccgcccaccgcagaagt                                        <  4:46167‑M2/147‑91 (MQ=255)
                                                                                                            ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                <  8:280447/123‑1 (MQ=255)
                                                                                                            ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                >  7:280447/1‑123 (MQ=255)
                                                                                                            ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCt                                        >  1:142116/1‑147 (MQ=255)
                                                                                                             cGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCCGGCACTGCGCCAGCTGCCGATCCTGCCGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTg                                       >  1:81031/1‑147 (MQ=255)
                                                                                                               ttATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCGGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGaa                                     >  7:237533/1‑147 (MQ=255)
                                                                                                                tATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg                                                                                                         <  2:315055/78‑1 (MQ=255)
                                                                                                                tATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg                                                                                                         >  1:315055/1‑78 (MQ=255)
                                                                                                                 aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACa                                                                    >  8:209072/1‑114 (MQ=255)
                                                                                                                 aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACa                                                                    <  7:209072/114‑1 (MQ=255)
                                                                                                                   ccAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAAcc                                 >  7:224493/1‑147 (MQ=255)
                                                                                                                     aaTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTa                                                        >  1:387670/1‑122 (MQ=255)
                                                                                                                     aaTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTa                                                        <  2:387670/122‑1 (MQ=255)
                                                                                                                      aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca                                                                                              <  4:211342/83‑1 (MQ=255)
                                                                                                                      aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca                                                                                              >  3:211342/1‑83 (MQ=255)
                                                                                                                      aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAg                                                                                >  8:370613/1‑97 (MQ=255)
                                                                                                                      aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAg                                                                                <  7:370613/97‑1 (MQ=255)
                                                                                                                      aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                              >  2:124621/1‑147 (MQ=255)
                                                                                                                      aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                              >  2:211043/1‑147 (MQ=255)
                                                                                                                       ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                             >  5:191190/1‑147 (MQ=255)
                                                                                                                       ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                             >  4:369863/1‑147 (MQ=255)
                                                                                                                       ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                             <  6:191190/147‑1 (MQ=255)
                                                                                                                        tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAAt                           >  3:20333/1‑148 (MQ=255)
                                                                                                                            cTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgc                       >  3:117749/1‑148 (MQ=255)
                                                                                                                            cTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgc                       >  4:66974/1‑148 (MQ=255)
                                                                                                                              gCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgcgc                     >  1:373278/1‑148 (MQ=255)
                                                                                                                               cGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgcgc                     <  1:124621/147‑1 (MQ=255)
                                                                                                                               cGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGcc                    >  1:106998/1‑148 (MQ=255)
                                                                                                                                  tATCCGCAAAGCTGGCGCGATAGTCCGCAGGCCCTGCGCCAGCTGCCGCTCCTGCCGCCGATGAAGCAGCAAGTCACCCGGGCAGCCGGGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAACACCGAGAATGCGCGCCcgc                 >  1:320947/1‑147 (MQ=255)
                                                                                                                                    tCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCcgac                <  3:133338/147‑1 (MQ=255)
                                                                                                                                     ccGCAAATCTGTCTCGATAGTCCGCAGGCACTgcgccagctttgcggataacgcagattaattggataacgggcaatcccttccaccgtttcgccaaccatcgccccgcccaccgcagaagtcacaaacaactg                            >  3:148088‑M2/1‑32 (MQ=255)
                                                                                                                                      cGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagctttgcggataacgcagattaattgtataactggcaatcgcttccaaagtttcgccaaccatcgccccgcccaccgcagaagtcacaatcaactgc                           <  4:148088‑M2/134‑104 (MQ=255)
                                                                                                                                        cAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCt           <  4:20333/148‑1 (MQ=255)
                                                                                                                                            gCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGAt       <  2:142116/148‑1 (MQ=255)
                                                                                                                                                 cgcgATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTtata  >  1:201967/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
TAACCGTGAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATA  >  NC_000913/600897‑601189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.