New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 60104456 (0.620)3 (0.040) 3/226 NT 5.2% coding (2331/3144 nt) cusA copper/silver efflux system, membrane component
?NC_000913 = 601061 57 (0.680)coding (2348/3144 nt) cusA copper/silver efflux system, membrane component

TATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCGATGCCCGCGATC  >  NC_000913/600924‑601204
                                                                                                                                         |                                                                                                                                               
tATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg                                                                                                                                       <  2:379790/148‑1 (MQ=255)
                    aGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATg                                                                                                                     >  7:185071/1‑146 (MQ=255)
                         tttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGTAAGGGATTGCCCGTTATACAATTAATCTGAGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAGCCTGACGCCGATGAagcag                                                                                                               >  2:326935/1‑147 (MQ=255)
                             tgACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcag                                                                                                               <  2:60588/143‑1 (MQ=255)
                             tgACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcag                                                                                                               >  1:60588/1‑143 (MQ=255)
                                cTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc                                                                                                       <  7:213982/148‑1 (MQ=255)
                                     gCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCAGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTgg                                                                                                  >  4:321738/1‑148 (MQ=255)
                                      cGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTg                                                                                                   <  7:215275/146‑1 (MQ=255)
                                               gggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCATGCCGCCGATGAAGCAGCAAATCACCCTGGCCGCCGTGGc                                                                                        >  4:254659/1‑148 (MQ=255)
                                                ggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGcc                                                                                       <  3:321738/148‑1 (MQ=255)
                                                       gTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACAtt                                                                                 >  1:106747/1‑147 (MQ=255)
                                                        ttGGCGTAACGGTTGAAGGGATTGCCCGTTTTCCAATTAATCTGCGTTTTCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               <  8:185071/148‑1 (MQ=255)
                                                        ttGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               <  2:106747/148‑1 (MQ=255)
                                                        tgggggAATCGGTGTTAGGGATTGCCCTTTATCCAATTAATCTTCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAGCCTGACGCCGATGTAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               <  5:303284/143‑1 (MQ=255)
                                                              aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTg                                                                                                                              >  5:398513/1‑95 (MQ=255)
                                                              aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTg                                                                                                                              <  6:398513/95‑1 (MQ=255)
                                                              aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAcc                                                                                                      >  2:370477/1‑119 (MQ=255)
                                                              aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAcc                                                                                                      <  1:370477/119‑1 (MQ=255)
                                                               aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTctct                                                                        <  2:247946/148‑1 (MQ=255)
                                                                                cccGTTATACAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCCCTGCGCCAGCGGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGGCGATGCt                                                       <  1:326935/148‑1 (MQ=255)
                                                                                 ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagctttgcggataacgcagattaattggataacgggcaatcccttccaccgattcgccaaccatcgccccgcccaccgcagaagt                                                       <  4:46167‑M2/147‑91 (MQ=255)
                                                                                 ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               <  8:280447/123‑1 (MQ=255)
                                                                                 ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               >  7:280447/1‑123 (MQ=255)
                                                                                 ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCt                                                       >  1:142116/1‑147 (MQ=255)
                                                                                  cGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCCGGCACTGCGCCAGCTGCCGATCCTGCCGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTg                                                      >  1:81031/1‑147 (MQ=255)
                                                                                    ttATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCGGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGaa                                                    >  7:237533/1‑147 (MQ=255)
                                                                                     tATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg                                                                                                                        <  2:315055/78‑1 (MQ=255)
                                                                                     tATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg                                                                                                                        >  1:315055/1‑78 (MQ=255)
                                                                                      aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACa                                                                                   >  8:209072/1‑114 (MQ=255)
                                                                                      aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACa                                                                                   <  7:209072/114‑1 (MQ=255)
                                                                                        ccAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAAcc                                                >  7:224493/1‑147 (MQ=255)
                                                                                          aaTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTa                                                                       >  1:387670/1‑122 (MQ=255)
                                                                                          aaTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTa                                                                       <  2:387670/122‑1 (MQ=255)
                                                                                           aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca                                                                                                             <  4:211342/83‑1 (MQ=255)
                                                                                           aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca                                                                                                             >  3:211342/1‑83 (MQ=255)
                                                                                           aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAg                                                                                               >  8:370613/1‑97 (MQ=255)
                                                                                           aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAg                                                                                               <  7:370613/97‑1 (MQ=255)
                                                                                           aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                                             >  2:211043/1‑147 (MQ=255)
                                                                                           aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                                             >  2:124621/1‑147 (MQ=255)
                                                                                            ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                                            >  4:369863/1‑147 (MQ=255)
                                                                                            ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                                            <  6:191190/147‑1 (MQ=255)
                                                                                            ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                                            >  5:191190/1‑147 (MQ=255)
                                                                                             tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAAt                                          >  3:20333/1‑148 (MQ=255)
                                                                                                 cTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgc                                      >  3:117749/1‑148 (MQ=255)
                                                                                                 cTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgc                                      >  4:66974/1‑148 (MQ=255)
                                                                                                   gCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgcgc                                    >  1:373278/1‑148 (MQ=255)
                                                                                                    cGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgcgc                                    <  1:124621/147‑1 (MQ=255)
                                                                                                    cGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGcc                                   >  1:106998/1‑148 (MQ=255)
                                                                                                       tATCCGCAAAGCTGGCGCGATAGTCCGCAGGCCCTGCGCCAGCTGCCGCTCCTGCCGCCGATGAAGCAGCAAGTCACCCGGGCAGCCGGGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAACACCGAGAATGCGCGCCcgc                                >  1:320947/1‑147 (MQ=255)
                                                                                                         tCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCcgac                               <  3:133338/147‑1 (MQ=255)
                                                                                                          ccGCAAATCTGTCTCGATAGTCCGCAGGCACTgcgccagctttgcggataacgcagattaattggataacgggcaatcccttccaccgtttcgccaaccatcgccccgcccaccgcagaagtcacaaacaactg                                           >  3:148088‑M2/1‑32 (MQ=255)
                                                                                                           cGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagctttgcggataacgcagattaattgtataactggcaatcgcttccaaagtttcgccaaccatcgccccgcccaccgcagaagtcacaatcaactgc                                          <  4:148088‑M2/134‑104 (MQ=255)
                                                                                                             cAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCt                          <  4:20333/148‑1 (MQ=255)
                                                                                                                 gCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGAt                      <  2:142116/148‑1 (MQ=255)
                                                                                                                      cgcgATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTtata                 >  1:201967/1‑148 (MQ=255)
                                                                                                                         gATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCg              <  3:254659/148‑1 (MQ=255)
                                                                                                                          aTAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                                             >  4:306229/1‑116 (MQ=255)
                                                                                                                          aTAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                                             <  3:306229/116‑1 (MQ=255)
                                                                                                                           tAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCg                                               >  4:308116/1‑113 (MQ=255)
                                                                                                                           tAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCg                                               <  3:308116/113‑1 (MQ=255)
                                                                                                                           tAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCGAt            >  7:251743/1‑148 (MQ=255)
                                                                                                                                     gCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGCCGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCGATGCCCGCGATc  <  2:373278/148‑1 (MQ=255)
                                                                                                                                         tGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCg                                                            >  6:110810/1‑86 (MQ=255)
                                                                                                                                         tGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCg                                                            <  5:110810/86‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                               
TATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCGATGCCCGCGATC  >  NC_000913/600924‑601204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.