breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913127,5401.C69.2% 57.9 / 26.8 26coding (1846/1893 nt)aceFpyruvate dehydrogenase, dihydrolipoyltransacetylase component E2
*NC_0009134,296,0600CT36.7% 47.8 / 45.5 49intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009131,388,2850AG21.6% 65.9 / 16.5 37intergenic (+24/+20)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
*NC_0009131,388,2830CT20.5% 78.2 / 15.6 39intergenic (+22/+22)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
*NC_0009131,388,2840AT20.5% 81.1 / 17.3 39intergenic (+23/+21)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase

Marginal new junction evidence (lowest skew 10 of 16 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 434179547 (1.360)7 (0.230) 5/230 3.1 15.1% intergenic (‑167/‑116) melR/melA melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
?NC_000913 = 4341815 38 (1.270)intergenic (‑187/‑96) melR/melA melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
* ? NC_000913 274635 =NA (NA)6 (0.180) 6/258 3.1 NA noncoding (515/1195 nt) IS5 repeat region
?NC_000913 274654 = NA (NA)noncoding (496/1195 nt) IS5 repeat region
* ? NC_000913 364964 =39 (1.130)5 (0.150) 5/252 3.4 11.9% coding (1342/3075 nt) lacZ beta‑D‑galactosidase
?NC_000913 365015 = 37 (1.130)coding (1291/3075 nt) lacZ beta‑D‑galactosidase
* ? NC_000913 = 219634131 (0.900)5 (0.140) 5/266 3.6 13.5% intergenic (+8/‑133) metG/yehH methionyl‑tRNA synthetase/DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function
?NC_000913 = 2196367 33 (0.960)intergenic (+34/‑107) metG/yehH methionyl‑tRNA synthetase/DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function
* ? NC_000913 = 416834123 (0.670)5 (0.160) 4/246 3.7 23.1% intergenic (+141/‑31) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168363 12 (0.380)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 2729443 =17 (0.490)5 (0.160) 4/246 3.7 20.9% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 = 4168331 22 (0.690)intergenic (+131/‑41) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 2263690 =26 (0.750)4 (0.130) 4/246 3.7 16.3% intergenic (‑195/‑173) fruB/setB fused fructose‑specific PTS enzymes: IIA component/HPr component/lactose/glucose efflux system
?NC_000913 2263723 = 17 (0.530)intergenic (‑228/‑140) fruB/setB fused fructose‑specific PTS enzymes: IIA component/HPr component/lactose/glucose efflux system
* ? NC_000913 3169605 =29 (0.840)4 (0.120) 4/254 3.8 12.2% coding (72/393 nt) ygiW hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein
?NC_000913 3169644 = 30 (0.910)coding (33/393 nt) ygiW hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein
* ? NC_000913 = 219310733 (0.960)4 (0.120) 4/256 3.8 12.2% coding (1062/1110 nt) mrp antiporter inner membrane protein
?NC_000913 = 2193136 26 (0.780)coding (1033/1110 nt) mrp antiporter inner membrane protein
* ? NC_000913 1320709 =32 (0.930)4 (0.120) 4/256 3.8 11.0% coding (676/1596 nt) trpD fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase
?NC_000913 1320732 = 34 (1.020)coding (653/1596 nt) trpD fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase