New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4213631 =	19 (0.630)	5 (0.180)	5/210	2.6	20.4%	intergenic (+14/+49)	yjaA/yjaB	stress‑induced protein/GNAT‑family putative N‑acetyltransferase; acetyl coenzyme A‑binding protein
	?	NC_000913	4213662 =	21 (0.740)					intergenic (+45/+18)	yjaA/yjaB	stress‑induced protein/GNAT‑family putative N‑acetyltransferase; acetyl coenzyme A‑binding protein

ACAGGTTGAGGAACGCATTCTCCATGAAGTGGTCGCTGGGGCAACGTTAATGAAATATCGCCAGTTCCACATCCATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGT  >  NC_000913/4213485‑4213732                                                                                                                                                   |                                                                                                      ttaatgagcaaaatgagcaggcggttgggttctataagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGt                                                                                                     >  6:46103‑M1/147‑149 (MQ=255) ttaatgagcaaaatgagcaggcggttgggttctataagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGt                                                                                                     <  4:153380‑M1/3‑1 (MQ=255)        gcaaaatgagcaggcggttgggttctataagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTAc                                                                                               <  4:22757‑M1/9‑1 (MQ=255)                       ggttgggttctataagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTggg                                                                                                  >  1:21660‑M1/125‑130 (MQ=255)                       ggttgggttctataagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTggg                                                                                                  <  2:21660‑M1/6‑1 (MQ=255)                       cATGAAGTGGTCGCTGGGGCAACGTTAATGAAATATCGCCAGTTCCACATCCATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAg                                                                                    >  6:30511/1‑144 (MQ=255)                       cATGAAGTGGTCGCTGGGGCAACGTTAATGAAATATCGCCAGTTCCACATCCATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAg                                                                                    <  5:30511/144‑1 (MQ=255)                                ctataagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccatatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTACTAAACCTGAAGTTCAGCCCACCgg                                                                       >  1:84650‑M1/116‑148 (MQ=255)                                   taagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGAt                                                                    >  3:22757‑M1/113‑148 (MQ=255)                                    aagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTggg                                                                                                  >  1:100155‑M1/112‑117 (MQ=255)                                    aagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTggg                                                                                                  <  2:100155‑M1/6‑1 (MQ=255)                                     agaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGt                                                                                                     >  1:14918‑M1/111‑113 (MQ=255)                                     agaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGt                                                                                                     <  2:14918‑M1/3‑1 (MQ=255)                                            aCGTTAATGAAATATCGCCAGTTCCACATCCATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGcc                                                                             <  6:47454/130‑1 (MQ=255)                                            aCGTTAATGAAATATCGCCAGTTCCACATCCATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGcc                                                                             >  5:47454/1‑130 (MQ=255)                                                                  tctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGa                                                                     <  6:155542‑M1/35‑1 (MQ=255)                                                                  tctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGa                                                                     >  5:155542‑M1/82‑116 (MQ=255)                                                                         ccATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAAc                                                                                          <  8:131396/88‑1 (MQ=255)                                                                         ccATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAAc                                                                                          >  7:131396/1‑88 (MQ=255)                                                                                     aGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTa                                                    <  4:74689/114‑1 (MQ=255)                                                                                     aGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTa                                                    >  3:74689/1‑114 (MQ=255)                                                                                               aGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGc                                                       >  3:141116/1‑101 (MQ=255)                                                                                               aGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGc                                                       <  4:141116/101‑1 (MQ=255)                                                                                                            tCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACg                       >  5:106057/1‑120 (MQ=255)                                                                                                            tCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACg                       <  6:106057/120‑1 (MQ=255)                                                                                                              aTGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACgg                      <  2:2764/119‑1 (MQ=255)                                                                                                              aTGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACgg                      >  1:2764/1‑119 (MQ=255)                                                                                                               tGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGt  >  3:145262/1‑138 (MQ=255)                                                                                                               tGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGt  <  4:145262/138‑1 (MQ=255)                                                                                                                   aaTGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCa                             >  5:128676/1‑107 (MQ=255)                                                                                                                   aaTGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCa                             <  6:128676/107‑1 (MQ=255)                                                                                                                                             aCCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAg                            >  6:142956/1‑82 (MQ=255)                                                                                                                                                   |                                                                                                      ACAGGTTGAGGAACGCATTCTCCATGAAGTGGTCGCTGGGGCAACGTTAATGAAATATCGCCAGTTCCACATCCATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGT  >  NC_000913/4213485‑4213732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.