New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4213631 =	19 (0.630)	5 (0.180)	5/210	2.6	20.4%	intergenic (+14/+49)	yjaA/yjaB	stress‑induced protein/GNAT‑family putative N‑acetyltransferase; acetyl coenzyme A‑binding protein
	?	NC_000913	4213662 =	21 (0.740)					intergenic (+45/+18)	yjaA/yjaB	stress‑induced protein/GNAT‑family putative N‑acetyltransferase; acetyl coenzyme A‑binding protein

GTCGCTGGGGCAACGTTAATGAAATATCGCCAGTTCCACATCCATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAACCGCCTGCTCATTTTGCTCATTAA  >  NC_000913/4213516‑4213807                                                                                                                                                   |                                                                                                                                                  ctataagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccatatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTACTAAACCTGAAGTTCAGCCCACCgg                                                                                                                                                  >  1:84650‑M1/116‑148 (MQ=255)    taagaaggtgggttttaaggttacgggacgctctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGAt                                                                                                                                               >  3:22757‑M1/113‑148 (MQ=255)                                   tctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGa                                                                                                                                                <  6:155542‑M1/35‑1 (MQ=255)                                   tctgaggtggacgatttggggaaaccgtatccgttgctgaatctggcgtatgtgggggcgtaggcgattttttctcatcccGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGa                                                                                                                                                >  5:155542‑M1/82‑116 (MQ=255)                                                      aGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTa                                                                                                                               <  4:74689/114‑1 (MQ=255)                                                      aGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTa                                                                                                                               >  3:74689/1‑114 (MQ=255)                                                                aGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGc                                                                                                                                  <  4:141116/101‑1 (MQ=255)                                                                aGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGc                                                                                                                                  >  3:141116/1‑101 (MQ=255)                                                                             tCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACg                                                                                                  >  5:106057/1‑120 (MQ=255)                                                                             tCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACg                                                                                                  <  6:106057/120‑1 (MQ=255)                                                                               aTGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACgg                                                                                                 <  2:2764/119‑1 (MQ=255)                                                                               aTGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACgg                                                                                                 >  1:2764/1‑119 (MQ=255)                                                                                tGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGt                                                                             >  3:145262/1‑138 (MQ=255)                                                                                tGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGt                                                                             <  4:145262/138‑1 (MQ=255)                                                                                    aaTGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCa                                                                                                        <  6:128676/107‑1 (MQ=255)                                                                                    aaTGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCa                                                                                                        >  5:128676/1‑107 (MQ=255)                                                                                                              aCCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAg                                                                                                       >  6:142956/1‑82 (MQ=255)                                                                                                               atcccggtgggctgaacttcaggtttagtacccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTta                                    >  3:22757‑M2/37‑148 (MQ=255)                                                                                                                tcccggtgggctgaacttcaggtttagtacccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCaga                                                                   >  5:155542‑M2/36‑116 (MQ=255)                                                                                                                tcccggtgggctgaacttcaggtttagtacccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCaga                                                                   <  6:155542‑M2/81‑1 (MQ=255)                                                                                                                  ccggtgggctgaacttcaggtttagtacccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATATGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAg                                 >  1:84650‑M2/34‑148 (MQ=255)                                                                                                                               aaCCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTccc                                                            >  6:154334/1‑108 (MQ=255)                                                                                                                               aaCCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTccc                                                            <  5:154334/108‑1 (MQ=255)                                                                                                                               aaCCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAACCGCCTg                   >  3:153380/1‑149 (MQ=255)                                                                                                                                 ccTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAACCGCCTGCt                 >  7:75963/1‑149 (MQ=255)                                                                                                                                   tGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAAcc                             >  4:78552/1‑135 (MQ=255)                                                                                                                                   tGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAAcc                             <  3:78552/135‑1 (MQ=255)                                                                                                                                     aaGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAAcc                                                      <  2:16552/108‑1 (MQ=255)                                                                                                                                     aaGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAAcc                                                      >  1:16552/1‑108 (MQ=255)                                                                                                                                          gtacccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAACCGCCTGCTCATTTTGc         <  4:22757‑M2/139‑1 (MQ=255)                                                                                                                                             cccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACcttctt                                     <  2:100155‑M2/111‑1 (MQ=255)                                                                                                                                             cccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACcttctt                                     >  1:100155‑M2/7‑117 (MQ=255)                                                                                                                                             cccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAAcc                        <  2:21660‑M2/124‑1 (MQ=255)                                                                                                                                             cccaccGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAAcc                        >  1:21660‑M2/7‑130 (MQ=255)                                                                                                                                                accGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACcttct                                      <  2:14918‑M2/110‑1 (MQ=255)                                                                                                                                                accGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACcttct                                      >  1:14918‑M2/4‑113 (MQ=255)                                                                                                                                                accGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAACCGCCTGCTCATTTTGCTCATTaa  <  4:153380‑M2/146‑1 (MQ=255)                                                                                                                                                accGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAACCGCCTGCTCATTTTGCTCATTaa  >  6:46103‑M2/4‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GTCGCTGGGGCAACGTTAATGAAATATCGCCAGTTCCACATCCATGCGCAATCAGCGGTACTCAGTGATAGTGCGGTCATGGCAATGCTTAAGCAGAAATAATCGTGTCACCATTGGTGGGTACTAAACCTGAAGTTCAGCCCACCGGGATGAGAAAAAATCGCCTACGCCCCCACATACGCCAGATTCAGCAACGGATACGGTTTCCCCAAATCGTCCACCTCAGAGCGTCCCGTAACCTTAAAACCCACCTTCTTATAGAACCCAACCGCCTGCTCATTTTGCTCATTAA  >  NC_000913/4213516‑4213807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.