New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	974765 =	11 (0.370)	4 (0.140)	4/210	3.0	35.7%	coding (447/1323 nt)	mukF	chromosome condensin MukBEF, kleisin‑like subunit, binds calcium
	?	NC_000913	974803 =	4 (0.140)					coding (485/1323 nt)	mukF	chromosome condensin MukBEF, kleisin‑like subunit, binds calcium

CCGTCTGACGCCGCTCGGCATCGGCATTACTGACTACTACATCCGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAAC  >  NC_000913/974621‑974859                                                                                                                                                 |                                                                                               ccgaaagcaacaattcacagctggaaatcgccgcccgccagtctttgttcagcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaatAttt                                                                                             >  5:6284‑M1/145‑148 (MQ=255)    tCTGACGCCGCTCGGCATCGGCATTACTGACTACTACATCCGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACt                                                                                         <  7:127962/149‑1 (MQ=255)                               tGACTACTACATCCGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCa                                                                                     >  6:145051/1‑126 (MQ=255)                               tGACTACTACATCCGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCa                                                                                     <  5:145051/126‑1 (MQ=255)                                            tttgttcagcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaata                                                                                                <  6:89193‑M1/1‑1 (MQ=255)                                            tttgttcagcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaata                                                                                                >  5:89193‑M1/102‑102 (MQ=255)                                            tttgttcagcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaatATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTc                                                       <  1:165226‑M1/42‑1 (MQ=255)                                            tttgttcagcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaatATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTc                                                       >  2:165226‑M1/102‑143 (MQ=255)                                                   gcgAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAAtt                                          >  5:77574/1‑149 (MQ=255)                                                   agcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaata                                                                                                >  3:115824‑M1/95‑95 (MQ=255)                                                   agcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaata                                                                                                <  4:115824‑M1/1‑1 (MQ=255)                                                                    gtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaatATTTCACTGGCACCGTAATGTCTATGCGCCACTg                                                               >  1:55245‑M1/78‑111 (MQ=255)                                                                    gtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaatATTTCACTGGCACCGTAATGTCTATGCGCCACTg                                                               <  2:55245‑M1/34‑1 (MQ=255)                                                                    cGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCt                         <  6:77574/149‑1 (MQ=255)                                                                                          ttGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGaa   >  7:136904/1‑149 (MQ=255)                                                                                            gtgGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAAc  <  8:136904/148‑1 (MQ=255)                                                                                                        cTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATgc                                                                      >  4:111834/1‑68 (MQ=255)                                                                                                        cTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATgc                                                                      <  3:111834/68‑1 (MQ=255)                                                                                                        cTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATgc                                                                      <  7:143953/68‑1 (MQ=255)                                                                                                        cTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATgc                                                                      >  8:143953/1‑68 (MQ=255)                                                                                                                                                 |                                                                                               CCGTCTGACGCCGCTCGGCATCGGCATTACTGACTACTACATCCGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAAC  >  NC_000913/974621‑974859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.