New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	974765 =	11 (0.370)	4 (0.140)	4/210	3.0	35.7%	coding (447/1323 nt)	mukF	chromosome condensin MukBEF, kleisin‑like subunit, binds calcium
	?	NC_000913	974803 =	4 (0.140)					coding (485/1323 nt)	mukF	chromosome condensin MukBEF, kleisin‑like subunit, binds calcium

CGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCTGAACAAAGACTGGCGGGCGGCGATTTCCAGCTGTGAATTGTTGCTTTCGG  >  NC_000913/974664‑974946                                                                                                                                            |                                                                                                                                                tttgttcagcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaatATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTc                                                                                                                                              <  1:165226‑M1/42‑1 (MQ=255) tttgttcagcaactgggcgatatcgtccttcacctgctgctgctgttcgtccatcagacgttgcgtcaggtcgatactgtcgaaaatttctgctaccgaatATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTc                                                                                                                                              >  2:165226‑M1/102‑143 (MQ=255)        gcgAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAAtt                                                                                                                                 >  5:77574/1‑149 (MQ=255)                         cGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCt                                                                                                                <  6:77574/149‑1 (MQ=255)                                               ttGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGaa                                                                                          >  7:136904/1‑149 (MQ=255)                                                 gtgGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAAc                                                                                         <  8:136904/148‑1 (MQ=255)                                                                                                  gaatatttcagtggcgcatagacattacggtgccagtgaaatATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCTGAACaaa                                             <  1:165226‑M2/101‑1 (MQ=255)                                                                                                  gaatatttcagtggcgcatagacattacggtgccagtgaaatATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCTGAACaaa                                             >  2:165226‑M2/43‑143 (MQ=255)                                                                                                          cagtggcgcatagacattacggtgccagtgaaatATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGAc                                                                     >  1:55245‑M2/35‑111 (MQ=255)                                                                                                          cagtggcgcatagacattacggtgccagtgaaatATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGAc                                                                     <  2:55245‑M2/77‑1 (MQ=255)                                                                                                                                        aaatATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCTGAACAAAGACTGGCGGGCGGCGATTTCCAGCTGTGAATTGTTGCTTTCgg  >  5:6284‑M2/5‑148 (MQ=255)                                                                                                                                           tATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCt                                                    >  3:115824‑M2/2‑95 (MQ=255)                                                                                                                                           tATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCt                                                    <  4:115824‑M2/94‑1 (MQ=255)                                                                                                                                           tATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCTGAACaaa                                             >  5:89193‑M2/2‑102 (MQ=255)                                                                                                                                           tATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCTGAACaaa                                             <  6:89193‑M2/101‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                CGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCACTGAAATATTCGGTAGCAGAAATTTTCGACAGTATCGACCTGACGCAACGTCTGATGGACGAACAGCAGCAGCAGGTGAAGGACGATATCGCCCAGTTGCTGAACAAAGACTGGCGGGCGGCGATTTCCAGCTGTGAATTGTTGCTTTCGG  >  NC_000913/974664‑974946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.