| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_000913 | 3,559,357 | Δ1,629 bp | 100% | [rtcR]–[glpG] | [rtcR], glpR, glpR, [glpG] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3559357 | 3560985 | 1629 | 102 [0] | [1] 103 | [rtcR]–[glpG] | [rtcR],glpR,glpR,[glpG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3559356 | 0 (0.000) | 93 (1.310) | 75/258 | NT | 99.5% | coding (1089/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | NC_000913 | 3560986 = | 1 (0.010) | coding (467/831 nt) | glpG | rhomboid intramembrane serine protease | |||||
Only 100 of 103 total aligned reads displayed.
ACACCACGCCAGAAAGCCCGCCAAACCACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAACA > NC_000913/3560840‑3561133 | gcagcgatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagag < 6:282775‑M2/2‑1 (MQ=255) cagcgatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagag > 8:136504‑M2/146‑147 (MQ=255) gatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGt > 7:60836‑M2/142‑148 (MQ=255) gatcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGt > 7:41681‑M2/142‑148 (MQ=255) atcgccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGtt > 7:302242‑M2/141‑148 (MQ=255) gccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTa > 8:20311‑M2/138‑146 (MQ=255) ccaggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAaga < 3:43568‑M2/13‑1 (MQ=255) caggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgcagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAagag < 6:228520‑M2/14‑1 (MQ=255) caggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAagag < 3:47167‑M2/14‑1 (MQ=255) ggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGa < 2:75421‑M2/16‑1 (MQ=255) gtgagcagtgattttcagcttatagccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGa > 8:17679‑M2/133‑148 (MQ=255) tgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGata < 8:107251‑M2/18‑1 (MQ=255) agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat < 5:100677‑M2/19‑1 (MQ=255) agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat < 1:46163‑M2/19‑1 (MQ=255) gcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGCGGATATGc < 1:312430‑M2/21‑1 (MQ=255) gcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGa < 6:196385‑M2/16‑1 (MQ=255) gcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGa > 5:196385‑M2/129‑144 (MQ=255) gtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccggatctacgccagAGCAGGTTAAAGAGGATATGCAt > 6:301893‑M2/126‑148 (MQ=255) tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGc > 6:208556‑M2/125‑127 (MQ=255) tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGc < 5:208556‑M2/3‑1 (MQ=255) tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCAt > 3:37035‑M2/125‑147 (MQ=255) attttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAg < 4:211820‑M2/26‑1 (MQ=255) ttttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGc > 7:279230‑M2/122‑148 (MQ=255) agcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGaa < 4:83890‑M2/32‑1 (MQ=255) gcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGt > 7:208832‑M2/116‑149 (MQ=255) ttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTg > 4:220130‑M2/114‑148 (MQ=255) atcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCAt > 8:305938‑M2/112‑149 (MQ=255) gccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTaa > 7:249319‑M2/109‑149 (MQ=255) gccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgaacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATtac > 4:123567‑M2/109‑148 (MQ=255) gaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat > 4:144210‑M2/105‑123 (MQ=255) gaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat < 3:144210‑M2/19‑1 (MQ=255) aacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGt > 4:103190‑M2/104‑149 (MQ=255) aacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGt > 4:120075‑M2/104‑149 (MQ=255) cggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTgg < 2:240740‑M2/48‑1 (MQ=255) cgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGa < 7:17679‑M2/52‑1 (MQ=255) gcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAg > 3:12595‑M2/96‑149 (MQ=255) cgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGt < 3:3609‑M2/55‑1 (MQ=255) gatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGt > 7:209592‑M2/94‑148 (MQ=255) tttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAAc < 7:4607‑M2/58‑1 (MQ=255) tttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAAc > 4:155255‑M2/92‑149 (MQ=255) agctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATTTGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAAc < 1:9393‑M2/66‑1 (MQ=255) aCAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACGACCAGAGGAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGaa < 2:15611/148‑1 (MQ=255) gttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTgg > 8:307162‑M2/79‑126 (MQ=255) gttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCaa < 5:57540‑M2/70‑1 (MQ=255) ccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTc < 7:124076‑M2/75‑1 (MQ=255) cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCATGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa < 5:93046‑M2/76‑1 (MQ=255) cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa < 8:60836‑M2/76‑1 (MQ=255) cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa < 3:155255‑M2/76‑1 (MQ=255) aaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTTAgt < 4:12595‑M2/78‑1 (MQ=255) aaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCaga < 1:143641‑M2/78‑2 (MQ=255) aggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtg < 8:208832‑M2/79‑1 (MQ=255) ggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtgt < 8:209592‑M2/80‑1 (MQ=255) ggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAgtgt < 8:247725‑M2/80‑1 (MQ=255) gcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgtgtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGtt < 1:218912‑M2/81‑1 (MQ=255) gcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGtt < 1:234286‑M2/81‑1 (MQ=255) caaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATCTGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTg < 7:305938‑M2/82‑1 (MQ=255) caaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTaa < 7:313232‑M2/57‑1 (MQ=255) caaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTaa > 8:313232‑M2/68‑124 (MQ=255) aatttcgcgaagatctgtccgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGTGTAGTGCAGTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTAAGTGTTGGa > 4:66275‑M2/66‑149 (MQ=255) atttcgagaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGAt < 5:301893‑M2/85‑1 (MQ=255) tttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATc < 7:95164‑M2/86‑1 (MQ=255) gcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGaa < 3:220130‑M2/89‑1 (MQ=255) gcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGaa < 8:41681‑M2/89‑1 (MQ=255) cgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATg > 4:106817‑M2/59‑149 (MQ=255) gaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAATGAGGTTATGCATCAGCGAGAAGTGCATTAAAGGGTGGCTGAAGTAACGCAAGAACTCAAATTTCAGTGTTGGATCGAATgg > 2:304914‑M2/58‑149 (MQ=255) gaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATgg > 3:1869‑M2/58‑149 (MQ=255) aagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggc < 5:289209‑M2/93‑1 (MQ=255) agatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggc > 1:33796‑M2/56‑148 (MQ=255) gatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggcca < 3:277975‑M2/95‑1 (MQ=255) gatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggcca < 4:27787‑M2/95‑1 (MQ=255) atctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggccag > 5:45088‑M2/54‑149 (MQ=255) tacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggccag < 1:29418‑M2/96‑1 (MQ=255) tacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGgccaggccag > 5:30909‑M2/49‑149 (MQ=255) gcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGgccagcca > 2:295062‑M2/46‑149 (MQ=255) cggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATaa < 8:249319‑M2/107‑1 (MQ=255) gatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGa > 3:128381‑M2/41‑124 (MQ=255) gatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGa < 4:128381‑M2/84‑1 (MQ=255) gatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACa < 1:295062‑M2/109‑1 (MQ=255) atcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACAt < 1:119839‑M2/110‑1 (MQ=255) caatctctggaccttcatcctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCa > 3:42049‑M2/38‑149 (MQ=255) tctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTcc > 7:211114‑M2/33‑149 (MQ=255) tggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTc < 3:106817‑M2/116‑1 (MQ=255) tggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTc < 6:45088‑M2/116‑1 (MQ=255) cttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGc > 3:56818‑M2/26‑149 (MQ=255) ccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCATATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCgaga < 8:279230‑M2/129‑1 (MQ=255) ccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCgag > 4:130188‑M2/21‑148 (MQ=255) cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGaa > 1:67539‑M2/20‑149 (MQ=255) cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGaa > 6:174892‑M2/20‑149 (MQ=255) cgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGTAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCTGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGc < 8:302242‑M2/135‑1 (MQ=255) gggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCa < 4:37035‑M2/136‑1 (MQ=255) gggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCa > 2:269761‑M2/14‑149 (MQ=255) gggtctaagccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTCGAACGAATGGAAAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCa > 7:1961‑M2/14‑149 (MQ=255) ggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGCTCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCAt > 2:98737‑M2/13‑149 (MQ=255) tctacgccagAGCAGGTTAAAGAGGATATTCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCTTATCATCACTTCCTGATCGCCGAGAATTTGCATgg < 3:123567‑M2/139‑1 (MQ=255) tctacgccagAGCAGGTTAAAGAGGATATGCATCAGAGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATgg > 5:117413‑M2/11‑149 (MQ=255) tacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGc > 8:37305‑M2/9‑148 (MQ=255) tacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGc > 4:228770‑M2/9‑148 (MQ=255) cgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTTCATTTACGCGTGGGTGAAGTTACGCCAGAACTCATATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATTGCaa < 8:1961‑M2/142‑1 (MQ=255) cgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCaa < 3:115197‑M2/142‑1 (MQ=255) gAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAaca < 7:136504‑M2/148‑1 (MQ=255) | ACACCACGCCAGAAAGCCCGCCAAACCACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCATGGCAATAAACA > NC_000913/3560840‑3561133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |