BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,559,357	Δ1,629 bp		[rtcR]–[glpG]	[rtcR], glpR, glpR, [glpG]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3559357	3560985	1629	102 [1]	[2] 104	[rtcR]–[glpG]	[rtcR],glpR,glpR,[glpG]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3559356	1 (0.010)	100 (0.980)	77/270	0.2	98.5%	coding (1089/1599 nt)	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression
*	?	NC_000913	3560986 =	2 (0.020)	100 (0.980)	77/270	0.2	98.5%	coding (467/831 nt)	glpG	rhomboid intramembrane serine protease

Only 100 of 102 total aligned reads displayed.

GGCAGCGATCGCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGCGCCAGGAAGATATTGAACCGAACCTGGATTATGAAGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTT  >  NC_000913/3559210‑3559503

ggCAGCGATCGCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGag                                                                                                                                                   >  7:445147‑M1/1‑147 (MQ=255)

 gCAGCGATCGCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagc                                                                                                                                                  <  7:41431‑M1/149‑4 (MQ=255)

   aGCGATCGCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcag                                                                                                                                                <  7:403583‑M1/149‑6 (MQ=255)

    gCGATCGCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcagg                                                                                                                                               <  5:10906‑M1/149‑7 (MQ=255)

      gATCGCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggt                                                                                                                                              >  7:10278‑M1/1‑141 (MQ=255)

          gCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaa                                                                                                                                          <  5:447181‑M1/148‑12 (MQ=255)

          gCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaa                                                                                                                                          <  4:305893‑M1/148‑12 (MQ=255)

            cAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagag                                                                                                                                       >  6:51319‑M1/1‑135 (MQ=255)

               gTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggat                                                                                                                                    <  1:364036‑M1/149‑18 (MQ=255)

                tGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggata                                                                                                                                   <  3:149886‑M1/149‑19 (MQ=255)

                 gAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatat                                                                                                                                  >  1:91766‑M1/1‑130 (MQ=255)

                  aGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatg                                                                                                                                 <  3:121290‑M1/149‑21 (MQ=255)

                  aGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatg                                                                                                                                 >  4:389008‑M1/1‑129 (MQ=255)

                  aGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatat                                                                                                                                  <  7:92847‑M1/148‑20 (MQ=255)

                    cAGTGATTTTAAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgca                                                                                                                               >  5:66063‑M1/1‑127 (MQ=255)

                      gTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcat                                                                                                                              >  1:371432‑M1/1‑125 (MQ=255)

                      gTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcat                                                                                                                              >  6:82597‑M1/1‑125 (MQ=255)

                       tGATTTTCCGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcat                                                                                                                              >  3:420955‑M1/1‑124 (MQ=255)

                       tGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatca                                                                                                                            <  8:23674‑M1/149‑26 (MQ=255)

                       tGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcat                                                                                                                              >  7:28039‑M1/1‑124 (MQ=255)

                           tttCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagc                                                                                                                          >  5:18072‑M1/1‑120 (MQ=255)

                           tttCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggata                                                                                                                                   >  7:252063‑M1/1‑120 (MQ=255)

                           tttCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggata                                                                                                                                   >  7:245342‑M1/1‑120 (MQ=255)

                           tttCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggata                                                                                                                                   <  8:245342‑M1/138‑19 (MQ=255)

                           tttCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggata                                                                                                                                   <  8:252063‑M1/138‑19 (MQ=255)

                               aGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaag                                                                                                                    >  6:310995‑M1/1‑116 (MQ=255)

                               aGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaa                                                                                                                     <  2:367879‑M1/148‑33 (MQ=255)

                               aGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaa                                                                                                                     <  8:204302‑M1/148‑33 (MQ=255)

                               aGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaa                                                                                                                     <  3:389008‑M1/148‑33 (MQ=255)

                               aGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGAGCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGGCTACGCCAGagcaggttaaagaggatatgcatcagcgagaag                                                                                                                    <  6:6470‑M1/149‑34 (MQ=255)

                                 cTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtg                                                                                                                  >  5:339675‑M1/1‑114 (MQ=255)

                                  ttATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCACTCTCTGGACCTTCACCCAGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtg                                                                                                                  >  6:100244‑M1/1‑113 (MQ=255)

                                       gCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagagg                                                                                                                                      >  4:351006‑M1/1‑108 (MQ=255)

                                        ccGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaac                                                                                                           >  3:144637‑M1/1‑107 (MQ=255)

                                              cGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgg                                                                                                     <  6:66063‑M1/149‑49 (MQ=255)

                                                 tGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggt                                                                                                   >  2:252701‑M1/1‑98 (MQ=255)

                                                 tGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgt                                                                                                       <  3:32456‑M1/144‑47 (MQ=255)

                                                 tGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgt                                                                                                       >  4:32456‑M1/1‑98 (MQ=255)

                                                   cgcgATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtg                                                                                                  >  7:125484‑M1/1‑96 (MQ=255)

                                                     cgATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATGTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCGGGGTCTACTCCTGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagt                                                                                              <  5:100244‑M1/149‑56 (MQ=255)

                                                           gcgcCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgc                                                                                         <  2:371432‑M1/148‑61 (MQ=255)

                                                           gcgcCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgc                                                                                         <  5:328385‑M1/148‑61 (MQ=255)

                                                            cgcCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgcca                                                                                       <  6:26440‑M1/149‑63 (MQ=255)

                                                             gcCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgc                                                                                         >  4:165319‑M1/1‑86 (MQ=255)

                                                               cAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaa                                                                                    <  3:374017‑M1/149‑66 (MQ=255)

                                                               cAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaa                                                                                    >  4:217933‑M1/1‑84 (MQ=255)

                                                                aGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaac                                                                                   >  2:302218‑M1/1‑83 (MQ=255)

                                                                aGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaac                                                                                   <  5:82597‑M1/149‑67 (MQ=255)

                                                                     gTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaa                                                                              >  1:296907‑M1/1‑78 (MQ=255)

                                                                     gTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaa                                                                                                            >  6:211812‑M1/1‑78 (MQ=255)

                                                                     gTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaa                                                                                                            <  5:211812‑M1/119‑42 (MQ=255)

                                                                         ccGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggataaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttc                                                                          <  7:88222‑M1/149‑76 (MQ=255)

                                                                          cGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGaggaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttca                                                                         <  1:302218‑M1/149‑77 (MQ=255)

                                                                           gAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcag                                                                        >  5:394600‑M1/1‑72 (MQ=255)

                                                                              ggCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgt                                                                     >  4:162030‑M1/1‑69 (MQ=255)

                                                                                cAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcatcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttg                                                                   >  1:175699‑M1/1‑67 (MQ=255)

                                                                                 aaaTTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttg                                                                   >  4:243209‑M1/1‑66 (MQ=255)

                                                                                 aaaTTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgc                                                                                                                                <  7:435649‑M1/87‑22 (MQ=255)

                                                                                 aaaTTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgc                                                                                                                                >  8:435649‑M1/1‑66 (MQ=255)

                                                                                    tttCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGaggaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatc                                                               <  3:165319‑M1/149‑87 (MQ=255)

                                                                                    tttCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatc                                                               <  8:445147‑M1/149‑87 (MQ=255)

                                                                                    tttCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatc                                                               <  2:236294‑M1/149‑87 (MQ=255)

                                                                                         cgAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatg                                                          <  5:61362‑M1/149‑92 (MQ=255)

                                                                                           aaGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggc                                                        <  3:162030‑M1/149‑94 (MQ=255)

                                                                                             gATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggcca                                                      <  8:10278‑M1/149‑96 (MQ=255)

                                                                                                   tACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggcca                                                 <  6:18072‑M1/148‑101 (MQ=255)

                                                                                                   tACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccag                                                     <  1:252701‑M1/144‑97 (MQ=255)

                                                                                                     cgcgcgGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagc                                               <  2:296907‑M1/148‑103 (MQ=255)

                                                                                                      gcgcgGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagcc                                              >  8:231307‑M1/1‑45 (MQ=255)

                                                                                                      gcgcgGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgc                                                                                                                                <  3:201743‑M1/66‑22 (MQ=255)

                                                                                                      gcgcgGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgc                                                                                                                                >  4:201743‑M1/1‑45 (MQ=255)

                                                                                                        gcgGATCAATCTCTGGCCCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaacgcaaatttcagtgttggatcgaatggccaggccagccat                                            >  1:180694‑M1/1‑43 (MQ=255)

                                                                                                        gcgGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccata                                           <  7:99251‑M1/149‑107 (MQ=255)

                                                                                                          ggATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataac                                         <  8:28039‑M1/149‑109 (MQ=255)

                                                                                                           gATGAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggtttaagaggatattcatcatcgagaagtgcattaacgcgtgtgtgaagtaacgccagaactcaattttcagt                                                                       <  7:11459‑M1/118‑79 (MQ=255)

                                                                                                             tCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacat                                       >  5:152770‑M1/1‑38 (MQ=255)

                                                                                                                 tctcTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcactt                                  >  4:76970‑M1/1‑34 (MQ=255)

                                                                                                                 tctcTGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcactt                                  >  8:388976‑M1/1‑34 (MQ=255)

                                                                                                                   tctGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcccttcc                                >  5:251174‑M1/1‑32 (MQ=255)

                                                                                                                     tGGACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcc                                <  4:144637‑M1/147‑118 (MQ=255)

                                                                                                                       gACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcct                               <  5:51319‑M1/146‑119 (MQ=255)

                                                                                                                       gACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgacagaactcaaatttcagtgttggatcgaat                                                           <  5:301423‑M1/118‑91 (MQ=255)

                                                                                                                       gACCTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgacagaactcaaatttcagtgttggatcgaat                                                           >  6:301423‑M1/1‑28 (MQ=255)

                                                                                                                          cTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaacacaaatttcagtgttggatcgaatggccaggccagccataaca                                        <  8:293239‑M1/134‑110 (MQ=255)

                                                                                                                          cTTCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaacacaaatttcagtgttggatcgaatggccaggccagccataaca                                        >  7:293239‑M1/1‑25 (MQ=255)

                                                                                                                           ttCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgcc                        >  8:270500‑M1/1‑24 (MQ=255)

                                                                                                                            tCACCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgcc                        >  5:291031‑M1/1‑23 (MQ=255)

                                                                                                                              aCCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccga                      <  3:217933‑M1/148‑128 (MQ=255)

                                                                                                                              aCCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtg                                                                      <  5:19143‑M1/100‑80 (MQ=255)

                                                                                                                              aCCCTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtg                                                                      >  6:19143‑M1/1‑21 (MQ=255)

                                                                                                                               cccTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgag                     >  3:36167‑M1/1‑20 (MQ=255)

                                                                                                                               cccTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgag                     >  6:165777‑M1/1‑20 (MQ=255)

                                                                                                                                ccTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgagaa                   >  5:346120‑M1/1‑19 (MQ=255)

                                                                                                                                ccTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagc                                               <  2:309281‑M1/121‑103 (MQ=255)

                                                                                                                                ccTGCCGGGTCTACGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagc                                               >  1:309281‑M1/1‑19 (MQ=255)

                                                                                                                                  tGCCGGGTCTACGCCAGCGCCAGGAAGATATTGAACCGAACCTGGATTATGAAGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACa                 >  8:312996/1‑149 (MQ=255)

                                                                                                                                            aCGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgagaatttgcatggcaa       >  8:279128‑M1/1‑7 (MQ=255)

                                                                                                                                             cGCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgagaatttgcatggcaa       <  8:125484‑M1/148‑143 (MQ=255)

                                                                                                                                              gCCAGagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgagaatttgcatggcaat      >  2:24528‑M1/1‑5 (MQ=255)

                                                                                                                                                 agagcaggttaaagaggatatgcatcagcgagaagtgcattaacgcgtgggtgaagtaacgccagaactcaaatttcagtgttggatcgaatggccaggccagccataacatcacttcctgatcgccgagaatttgcatggcaataaac  <  3:243209‑M1/149‑148 (MQ=255)

GGCAGCGATCGCCAGGTGAGCAGTGATTTTCAGCTTATCGCCGGAACGGTGCGCGATTTGCGCCAGCTGGTTGCCGAAGGCAAATTTCGCGAAGATCTGTACGCGCGGATCAATCTCTGGACCTTCACCCTGCCGGGTCTACGCCAGCGCCAGGAAGATATTGAACCGAACCTGGATTATGAAGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTT  >  NC_000913/3559210‑3559503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`