breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT27.1% 139.6 / 56.5 86intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 40 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =61 (0.580)28 (0.300) 27/246 4.0 30.6% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 73 (0.790)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780559 (0.560)22 (0.240) 19/246 5.8 26.6% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 69 (0.740)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 3950444 =108 (1.030)13 (0.130) 12/264 8.5 11.0% intergenic (+24/‑63) ilvL/ilvX ilvG operon leader peptide/uncharacterized protein
?NC_000913 3950470 = 108 (1.080)intergenic (+50/‑37) ilvL/ilvX ilvG operon leader peptide/uncharacterized protein
* ? NC_000913 = 120961886 (0.820)6 (0.060) 5/248 11.5 6.3% pseudogene (2/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
?NC_000913 2471897 = 101 (1.080)pseudogene (226/579 nt) yfdL pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related
* ? NC_000913 2906594 =114 (1.090)5 (0.050) 5/252 11.6 5.0% intergenic (+11/+49) ygcG/eno TPM domain protein, putative phosphatase/enolase
?NC_000913 2906624 = 85 (0.890)intergenic (+41/+19) ygcG/eno TPM domain protein, putative phosphatase/enolase
* ? NC_000913 = 4045647147 (1.400)5 (0.050) 5/256 11.7 3.6% intergenic (+18/+23) yihF/yihG DUF945 family protein/inner membrane protein, inner membrane acyltransferase
?NC_000913 = 4045653 134 (1.390)intergenic (+24/+17) yihF/yihG DUF945 family protein/inner membrane protein, inner membrane acyltransferase
* ? NC_000913 = 171499883 (0.790)5 (0.050) 5/258 11.8 6.0% intergenic (+16/+28) gstA/pdxY glutathionine S‑transferase/pyridoxamine kinase
?NC_000913 = 1715004 80 (0.820)intergenic (+22/+22) gstA/pdxY glutathionine S‑transferase/pyridoxamine kinase
* ? NC_000913 1657887 =NA (NA)5 (0.050) 5/262 11.9 NA intergenic (+17/‑182) ynfD/ynfE DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
?NC_000913 1657910 = NA (NA)intergenic (+40/‑159) ynfD/ynfE DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
* ? NC_000913 281896 =113 (1.080)7 (0.070) 5/262 11.9 6.0% coding (88/1155 nt) yagA CP4‑6 prophage; putative DNA‑binding transcriptional regulator
?NC_000913 281923 = 111 (1.120)coding (61/1155 nt) yagA CP4‑6 prophage; putative DNA‑binding transcriptional regulator
* ? NC_000913 951207 =109 (1.040)5 (0.050) 5/266 12.0 4.7% intergenic (‑127/+65) pflA/pflB pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1
?NC_000913 951233 = 99 (0.980)intergenic (‑153/+39) pflA/pflB pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1