New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3158885 =	99 (1.120)	3 (0.040)	3/252	NT	3.2%	intergenic (+1/+42)	yqhH/ygiQ	outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein
	?	NC_000913	3158930 =	85 (1.010)					coding (2217/2220 nt)	ygiQ	Radical SAM superfamily protein
Rejected: Frequency below/above cutoff threshold.

CGACCCAGCGTCAGACGCCTGCTACGGCAAAAAAAGCGTCGTCTACGCAATCTCGTCCGGTGAATGCTGGTGCGAAGAAACGGCCTAAAGCGGCGGTTGGACGTTAAAAAATATCCCCGGCAACTGACACGCTACCGGGGATTTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3159033‑3158885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttaACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGTATTGCGG  >  NC_000913/3158930‑3159074                                                                                                                                                                                                                                                                                                        CGACCCAGCGTCAGACGCCTGCTACGGCAAAAAAAGCGTCGTCTACGCAATCTCGTCCGGTGAATGCTGGTGCGAAGAAACGGCCTAAAGCGGCGGTTGGACGTTAAAAAATATCCCCGGCAACTGACACGCTACCGGGGATTTTTTTA                                                                                                                                                   <  3:142860/149‑1                                                                                                       GTTAAAAAATATCCCCGGCAACTGACACGCTACCGGGGATTTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGT                                             >  7:38776/1‑149                                                                                                        TTAAAAAATATCCCCGGCAACTGACACGCTACCGGGGATTTTTTTAACGTCCAACCGCCGCTTTAGGTCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTC                                                        >  5:392857/1‑137                                                                                                        TTAAAAAATATCCCCGGCAACTGACACGCTACCGGGGATTTTTTTAACGTCCAACCGCCGCTTTAGGTCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTC                                                        <  6:392857/137‑1                                                                                                                                                  TTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGTATTGCGG  >  4:139673/1‑149                                                                                                                                                   TTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGTATTGCGG  <  4:228219/148‑1                                                                                                                                                   TTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGTATTGCGG  <  5:65181/148‑1                                                                                                                                                                                                                                                                                                        CGACCCAGCGTCAGACGCCTGCTACGGCAAAAAAAGCGTCGTCTACGCAATCTCGTCCGGTGAATGCTGGTGCGAAGAAACGGCCTAAAGCGGCGGTTGGACGTTAAAAAATATCCCCGGCAACTGACACGCTACCGGGGATTTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3159033‑3158885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttaACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGTATTGCGG  >  NC_000913/3158930‑3159074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.