breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT29.7% 143.5 / 78.4 101intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 43 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780553 (0.530)30 (0.340) 27/248 3.7 35.9% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 60 (0.680)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 3943624NA (NA)8 (0.080) 8/266 9.7 10.6% intergenic (+114/‑80) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 4037457 71 (0.710)intergenic (+122/‑62) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon
* ? NC_000913 1474033 =95 (0.950)7 (0.080) 7/260 10.0 7.2% intergenic (+20/‑188) ydbA/ydbC pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase
?NC_000913 1474063 = 93 (1.010)intergenic (+50/‑158) ydbA/ydbC pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase
* ? NC_000913 = 78122278 (0.780)7 (0.070)
+ATGT
7/272 10.4 7.3% noncoding (76/76 nt) lysY tRNA‑Lys
?NC_000913 = 781683 104 (1.040)intergenic (+31/‑402) lysQ/nadA tRNA‑Lys/quinolinate synthase, subunit A
* ? NC_000913 1722616 =97 (0.970)6 (0.070) 6/258 10.5 6.4% coding (496/2013 nt) ydhK putative efflux protein (PET) component of YdhJK efflux pump
?NC_000913 = 1722612 86 (0.940)coding (492/2013 nt) ydhK putative efflux protein (PET) component of YdhJK efflux pump
* ? NC_000913 = 78122278 (0.780)7 (0.070)
+AT
7/276 10.5 7.3% noncoding (76/76 nt) lysY tRNA‑Lys
?NC_000913 = 2521361 102 (1.020)intergenic (+33/+232) lysV/xapR tRNA‑Lys/transcriptional activator of xapAB
* ? NC_000913 = 3943624NA (NA)6 (0.060) 6/266 10.7 10.8% intergenic (+114/‑80) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 3943642 52 (0.520)intergenic (+132/‑62) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
* ? NC_000913 3708382 =85 (0.850)6 (0.060) 6/264 10.7 6.9% intergenic (‑677/+234) dppA/proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
?NC_000913 3708542 = 83 (0.880)intergenic (‑837/+74) dppA/proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
* ? NC_000913 3708366 =87 (0.870)6 (0.060) 6/264 10.7 7.0% intergenic (‑661/+250) dppA/proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
?NC_000913 3708390 = 78 (0.830)intergenic (‑685/+226) dppA/proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
* ? NC_000913 225078 =NA (NA)7 (0.070) 6/266 10.7 NA noncoding (1308/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225100 = NA (NA)noncoding (1330/1542 nt) rrsH 16S ribosomal RNA of rrnH operon