breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,307,2980GA35.0% 15.8 / 14.9 20P168S (CCC→TCC) alsKD‑allose kinase
*NC_0009134,296,0600CT34.5% 66.2 / 49.5 55intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009134,307,2900TC33.3% 19.4 / 14.6 21G170G (GGA→GGGalsKD‑allose kinase
*NC_0009134,307,2940AT33.3% 22.2 / 13.1 21L169Q (CTG→CAG) alsKD‑allose kinase
*NC_0009131,865,6820GC29.6% 38.3 / 21.5 28intergenic (‑46/+44)yeaE/mipAaldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
*NC_0009132,750,0780TG20.7% 65.6 / 10.8 29intergenic (+18/+37)yfjD/grpEUPF0053 family inner membrane protein/heat shock protein
*NC_0009131,868,8590C.20.6% 92.8 / 21.7 34intergenic (+17/‑96)yeaG/yeaHprotein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
*NC_0009132,750,0730GT20.0% 67.8 / 11.5 30intergenic (+13/+42)yfjD/grpEUPF0053 family inner membrane protein/heat shock protein

Marginal new junction evidence (lowest skew 10 of 51 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 264310039 (1.070)9 (0.280) 9/230 2.3 18.8% intergenic (‑256/+29) rodZ/rlmN MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent
?NC_000913 = 2643110 43 (1.320)intergenic (‑266/+19) rodZ/rlmN MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent
* ? NC_000913 = 417189635 (0.960)6 (0.180) 6/242 3.3 15.6% intergenic (+140/‑161) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
?NC_000913 = 4171901 32 (0.930)intergenic (+145/‑156) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
* ? NC_000913 = 404078919 (0.520)6 (0.180) 6/242 3.3 19.7% intergenic (+153/+117) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
?NC_000913 = 4171888 31 (0.910)intergenic (+132/‑169) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
* ? NC_000913 = 404077619 (0.520)6 (0.180) 6/242 3.3 19.4% intergenic (+140/+130) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
?NC_000913 = 4171901 32 (0.930)intergenic (+145/‑156) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
* ? NC_000913 = 404077619 (0.520)6 (0.180) 6/242 3.3 26.2% intergenic (+140/+130) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
?NC_000913 = 4040781 16 (0.470)intergenic (+145/+125) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
* ? NC_000913 3423270 =37 (1.010)6 (0.180) 6/242 3.3 15.4% intergenic (+76/+153) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 4171888 31 (0.910)intergenic (+132/‑169) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
* ? NC_000913 3423270 =37 (1.010)6 (0.180) 6/242 3.3 18.3% intergenic (+76/+153) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 4040768 19 (0.550)intergenic (+132/+138) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
* ? NC_000913 = 424073949 (1.340)6 (0.160) 6/258 3.5 11.1% intergenic (+4/+40) psiE/xylE phosphate starvation inducible protein/D‑xylose transporter
?NC_000913 = 4240769 47 (1.290)intergenic (+34/+10) psiE/xylE phosphate starvation inducible protein/D‑xylose transporter
* ? NC_000913 303617 =51 (1.400)5 (0.150) 5/232 3.5 9.4% intergenic (+12/+236) yagU/ykgJ DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
?NC_000913 303650 = 50 (1.520)intergenic (+45/+203) yagU/ykgJ DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
* ? NC_000913 47266 =37 (1.010)5 (0.150) 5/242 3.6 12.4% coding (21/531 nt) kefF potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent
?NC_000913 47307 = 36 (1.050)coding (62/531 nt) kefF potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent