New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3154233 =	36 (1.040)	5 (0.160)	5/236	2.9	13.7%	intergenic (+11/+29)	yghB/yqhC	general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter/transcriptional activator of yqhD
	?	NC_000913	3154259 =	30 (0.940)					intergenic (+37/+3)	yghB/yqhC	general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter/transcriptional activator of yqhD
Rejected: Frequency below/above cutoff threshold.

TTAAGTATGATTCCGTTCGTTAAACGCCATGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTG  >  NC_000913/3154085‑3154380                                                                                                                                                     |                                                                                                                                                    ttAAGTATGATTCCGTTCGTTAAACGCCATGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGGTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTcccc                                                                                                                                                     >  5:158761/1‑149 (MQ=255)     catgacggcatgaaggccagcgcagcagcgatgcgcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTc                                                                                                                                                 >  1:136090‑M1/145‑149 (MQ=255)      atgacggcatgaaggccagcgcagcagcgatgcgcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTcc                                                                                                                                                <  1:65321‑M1/6‑1 (MQ=255)      atgacggcatgaaggccagcgcagcagcgatgcgcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTcc                                                                                                                                                >  2:65321‑M1/144‑149 (MQ=255)          cggcatgaaggccagcgcagcagcgatgcgcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGt                                                                                                                                            >  1:123951‑M1/140‑149 (MQ=255)           ttCCGTTCGTTAAACGCCATGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGtt                                                                                                                                           <  6:158761/149‑1 (MQ=255)                     tAAACGCCATGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCgg                                                                                                                                 >  4:71777/1‑149 (MQ=255)                         cgcagcagcgatgcgcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAAc                                                                                                                             >  5:59532‑M1/125‑149 (MQ=255)                             aTGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAt                                                                                                                         <  6:144400/149‑1 (MQ=255)                               gAAGATCAGGTAATGACGTTCCTGATGATCCTGACAATTGACTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATAATGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGATGTACCGGTAACGTAtt                                                                                                                        >  7:146536/1‑148 (MQ=255)                                               cGTTGCTGTTGATCCTGCCAATTGGCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGc                                                                                                       <  8:146536/149‑1 (MQ=255)                                                  tCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCg                                                                                                    >  6:113765/1‑149 (MQ=255)                                                  gaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTccc                                                                                                                >  1:163445‑M1/100‑137 (MQ=255)                                                  gaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTccc                                                                                                                <  2:163445‑M1/38‑1 (MQ=255)                                                          atCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTg                                                                                            <  5:113765/149‑1 (MQ=255)                                                           tCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGtt                                                                                                                                           >  6:124227/1‑101 (MQ=255)                                                           tCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGtt                                                                                                                                           <  5:124227/101‑1 (MQ=255)                                                             gcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGc                                                                                                            >  4:1494‑M1/89‑130 (MQ=255)                                                             gcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGc                                                                                                            <  3:1494‑M1/42‑1 (MQ=255)                                                                   aTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCgg                                                                                                                                 >  6:31216/1‑103 (MQ=255)                                                                   aTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCgg                                                                                                                                 <  5:31216/103‑1 (MQ=255)                                                                           gTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGAATCGCCCGCATACTTGCCGCATCTTCCCCCGGc                                                                           >  5:123902/1‑149 (MQ=255)                                                                            ttAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGc                                                                           <  3:71777/148‑1 (MQ=255)                                                                                        ttGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAg                                                               >  6:100160/1‑148 (MQ=255)                                                                                           ttAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGATGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTaa                                                            >  2:168150/1‑148 (MQ=255)                                                                                           ttAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGATGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTaa                                                            <  1:168150/148‑1 (MQ=255)                                                                                                 aCGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTa                                                      >  1:91874/1‑148 (MQ=255)                                                                                                 aCGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCAGCTTCCCCCGGCGTCACACCGAAGTAACGTTTa                                                      >  1:162721/1‑148 (MQ=255)                                                                                                       tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTca                                                                       >  5:175755/1‑125 (MQ=255)                                                                                                       tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTca                                                                       <  6:175755/125‑1 (MQ=255)                                                                                                       tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTaa                                                     <  8:86131/143‑1 (MQ=255)                                                                                                       tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTaa                                                     >  7:86131/1‑143 (MQ=255)                                                                                                                  tAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTg                                                                                            >  6:83922/1‑93 (MQ=255)                                                                                                                  tAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTg                                                                                            <  5:83922/93‑1 (MQ=255)                                                                                                                     aaaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTaaa                                                    >  7:80179/1‑130 (MQ=255)                                                                                                                     aaaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTaaa                                                    <  8:80179/130‑1 (MQ=255)                                                                                                                       aaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATgc                               <  5:100160/149‑1 (MQ=255)                                                                                                                              cTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCAACTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATAGCGATGCGCTTTc                         <  2:162721/148‑1 (MQ=255)                                                                                                                               tGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATgcgcgtcggc                       >  3:125672/1‑143 (MQ=255)                                                                                                                                       cTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGAcg               >  3:63708/1‑149 (MQ=255)                                                                                                                                        tGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGa                                  <  4:95525/129‑1 (MQ=255)                                                                                                                                        tGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGa                                  >  3:95525/1‑129 (MQ=255)                                                                                                                                         gACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGAcgcg             >  2:146177/1‑149 (MQ=255)                                                                                                                                             aTTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATc         >  6:87989/1‑149 (MQ=255)                                                                                                                                                    ccGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGctgctg  >  1:22792/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTAAGTATGATTCCGTTCGTTAAACGCCATGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTG  >  NC_000913/3154085‑3154380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.