New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3154233 =	36 (1.040)	5 (0.160)	5/236	2.9	13.7%	intergenic (+11/+29)	yghB/yqhC	general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter/transcriptional activator of yqhD
	?	NC_000913	3154259 =	30 (0.940)					intergenic (+37/+3)	yghB/yqhC	general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter/transcriptional activator of yqhD
Rejected: Frequency below/above cutoff threshold.

ATGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATG  >  NC_000913/3154113‑3154402                                                                                                                                                   |                                                                                                                                                aTGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAt                                                                                                                                               <  6:144400/149‑1 (MQ=255)   gAAGATCAGGTAATGACGTTCCTGATGATCCTGACAATTGACTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATAATGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGATGTACCGGTAACGTAtt                                                                                                                                              >  7:146536/1‑148 (MQ=255)                   cGTTGCTGTTGATCCTGCCAATTGGCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGc                                                                                                                             <  8:146536/149‑1 (MQ=255)                      tCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCg                                                                                                                          >  6:113765/1‑149 (MQ=255)                      gaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTccc                                                                                                                                      >  1:163445‑M1/100‑137 (MQ=255)                      gaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTccc                                                                                                                                      <  2:163445‑M1/38‑1 (MQ=255)                              atCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTg                                                                                                                  <  5:113765/149‑1 (MQ=255)                                 gcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGc                                                                                                                                  <  3:1494‑M1/42‑1 (MQ=255)                                 gcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggggaagatgcggcaagaatgcgggcgatgcaggggaattaaataCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGc                                                                                                                                  >  4:1494‑M1/89‑130 (MQ=255)                                               gTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGAATCGCCCGCATACTTGCCGCATCTTCCCCCGGc                                                                                                 >  5:123902/1‑149 (MQ=255)                                                ttAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGc                                                                                                 <  3:71777/148‑1 (MQ=255)                                                            ttGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAg                                                                                     >  6:100160/1‑148 (MQ=255)                                                               ttAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGATGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTaa                                                                                  <  1:168150/148‑1 (MQ=255)                                                               ttAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGATGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTaa                                                                                  >  2:168150/1‑148 (MQ=255)                                                                     aCGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTa                                                                            >  1:91874/1‑148 (MQ=255)                                                                     aCGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCAGCTTCCCCCGGCGTCACACCGAAGTAACGTTTa                                                                            >  1:162721/1‑148 (MQ=255)                                                                           tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTca                                                                                             <  6:175755/125‑1 (MQ=255)                                                                           tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTca                                                                                             >  5:175755/1‑125 (MQ=255)                                                                           tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTaa                                                                           >  7:86131/1‑143 (MQ=255)                                                                           tttGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTaa                                                                           <  8:86131/143‑1 (MQ=255)                                                                                      tAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTg                                                                                                                  <  5:83922/93‑1 (MQ=255)                                                                                      tAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTg                                                                                                                  >  6:83922/1‑93 (MQ=255)                                                                                         aaaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTaaa                                                                          <  8:80179/130‑1 (MQ=255)                                                                                         aaaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTaaa                                                                          >  7:80179/1‑130 (MQ=255)                                                                                           aaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATgc                                                     <  5:100160/149‑1 (MQ=255)                                                                                                  cTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCAACTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATAGCGATGCGCTTTc                                               <  2:162721/148‑1 (MQ=255)                                                                                                   tGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATgcgcgtcggc                                             >  3:125672/1‑143 (MQ=255)                                                                                                         gcaggggaattaaatacgttcccggtacagcaaccgggaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGc                                                          <  3:1494‑M2/88‑1 (MQ=255)                                                                                                         gcaggggaattaaatacgttcccggtacagcaaccgggaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGc                                                          >  4:1494‑M2/43‑130 (MQ=255)                                                                                                           cTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGAcg                                     >  3:63708/1‑149 (MQ=255)                                                                                                            tGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGa                                                        >  3:95525/1‑129 (MQ=255)                                                                                                            tGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGa                                                        <  4:95525/129‑1 (MQ=255)                                                                                                             gggaattaaatacgttcccggtacagcaaccgggaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTc                                               <  2:163445‑M2/99‑1 (MQ=255)                                                                                                             gggaattaaatacgttcccggtacagcaaccgggaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTc                                               >  1:163445‑M2/39‑137 (MQ=255)                                                                                                             gACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGAcgcg                                   >  2:146177/1‑149 (MQ=255)                                                                                                                 aTTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATc                               >  6:87989/1‑149 (MQ=255)                                                                                                                        ccGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGctgctg                        >  1:22792/1‑149 (MQ=255)                                                                                                                          gttcccggtacagcaaccgggaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTgcg                      >  5:59532‑M2/26‑149 (MQ=255)                                                                                                                              CCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTgg                  <  1:171601‑M1/149‑1 (MQ=255)                                                                                                                                      tGTACCGGGAACGTATTTAATTCACCTGCATCGCCAGCATTCTTGACGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATg          >  7:38004/1‑149 (MQ=255)                                                                                                                                         accgggaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCg       >  1:123951‑M2/11‑149 (MQ=255)                                                                                                                                             ggaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCAt   <  1:65321‑M2/143‑1 (MQ=255)                                                                                                                                             ggaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCAt   >  2:65321‑M2/7‑149 (MQ=255)                                                                                                                                              gaacgTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATg  >  1:136090‑M2/6‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                ATGAAGATCAGGTAATGACGTTCCTGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATG  >  NC_000913/3154113‑3154402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.