New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2349901 =	42 (1.140)	5 (0.150)	5/222	3.1	11.8%	intergenic (+8/+34)	yfaH/glpQ	pseudogene/periplasmic glycerophosphodiester phosphodiesterase
	?	NC_000913	2349927 =	36 (1.070)					intergenic (+34/+8)	yfaH/glpQ	pseudogene/periplasmic glycerophosphodiester phosphodiesterase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAACTGCCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2350058‑2349901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatcctgCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCA  >  NC_000913/2349927‑2350032                                                                                                                                                                                                                                                                          TAAACTGCCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGC                                                                                                                     <  4:39854/149‑1                                  GTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGCTTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTGCATGCGCCATCCT                                                                                                             >  4:44957/1‑124                                  GTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTGCATGCGCCATCCT                                                                                                             <  3:44957/124‑1                                                                                                 GGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTT                               <  7:51958/139‑1                                                                                                 GGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTT                               >  8:51958/1‑139                                                                                                                      AGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGACATCAGTAAACAGCCCATTTACACCAGCTTTGTTATACAGAGCATCAGATACCTGATTCA  >  7:131743/1‑147                                                                                                                                       GGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATC                <  1:94924/116‑1                                                                                                                                       GGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATC                >  2:94924/1‑116                                                                                                                                                    agGCCATCCTGCAGTAAGATTACTCTTTATTAAGAATTTTTACTGCCTTATGAGTGATATCAGTAATGAGACCATTTACTACCGCTTTGTTATACAGAGCATCATATAACTGATTCA  <  7:118050/115‑1                                                                                                                                                    actCCATCCTGCAGTAACATTACTCTTTATTAAGAAAATTTACTGCCATATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATAATATAACTGATTaa  >  8:118050/4‑115                                                                                                                                                          TCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAG                                                        >  3:15957/1‑57                                                                                                                                                          TCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAG                                                        <  4:15957/57‑1                                                                                                                                                                                                                                                                          TAAACTGCCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2350058‑2349901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatcctgCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCA  >  NC_000913/2349927‑2350032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.