| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2349901 = | 42 (1.140) | 5 (0.150) | 5/222 | 3.1 | 11.8% | intergenic (+8/+34) | yfaH/glpQ | pseudogene/periplasmic glycerophosphodiester phosphodiesterase |
| ? | NC_000913 | 2349927 = | 36 (1.070) | intergenic (+34/+8) | yfaH/glpQ | pseudogene/periplasmic glycerophosphodiester phosphodiesterase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTAT > NC_000913/2349784‑2350059 | gtttCTATAGACAGATTTCGTTGATGGCTATAGAAATGCCGGTAGATGGCAGTCCACTGTTTTTACTACAATTGTGCATGGAACTATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATTGCGCATGAACGCCATCCTGCAGTaa < 8:87198/148‑1 (MQ=255) tttCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAAc < 4:19832/149‑1 (MQ=255) gACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTActct > 7:66657/1‑149 (MQ=255) aCAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACAtt > 6:42217/1‑143 (MQ=255) aCAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACAtt < 5:42217/143‑1 (MQ=255) aTTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTttat > 2:66913/1‑148 (MQ=255) gCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTa < 5:7597/148‑1 (MQ=255) gCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTAc < 1:66913/149‑1 (MQ=255) tAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTttatta < 4:157222/136‑1 (MQ=255) tAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTttatta > 3:157222/1‑136 (MQ=255) tAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTg > 2:21826/1‑149 (MQ=255) aaGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTAct < 8:124880/126‑1 (MQ=255) aaGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTAct > 7:124880/1‑126 (MQ=255) gTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTAc < 1:196180/134‑1 (MQ=255) gTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTAc > 2:196180/1‑134 (MQ=255) tAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaaa < 1:21826/149‑1 (MQ=255) tttttACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAggg > 7:120725/1‑129 (MQ=255) tttttACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAggg < 8:120725/129‑1 (MQ=255) actacAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTacac > 1:33699/1‑149 (MQ=255) aaaTGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaaa > 6:95024/1‑122 (MQ=255) aaaTGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaaa < 5:95024/122‑1 (MQ=255) aaaTGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACAcc < 3:55377/145‑1 (MQ=255) aaaTGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACAcc > 4:55377/1‑145 (MQ=255) cATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTtat < 8:66657/149‑1 (MQ=255) gAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACa < 2:33699/148‑1 (MQ=255) aaaaaTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGaaa < 1:76216/69‑1 (MQ=255) aaaaaTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGaaa > 2:76216/1‑69 (MQ=255) aaaaaTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTtata < 5:86033/126‑1 (MQ=255) aaaaaTTTGATATGAGACACGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTAGTtata > 6:86033/1‑126 (MQ=255) gaCAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTca > 2:119025/1‑134 (MQ=255) gaCAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTca < 1:119025/134‑1 (MQ=255) aCAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTAtt > 7:50431/1‑148 (MQ=255) aGGATGGCGCATGCACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAAc > 3:44957/1‑124 (MQ=255) aGGATGGCGCATGCACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAAGCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAAc < 4:44957/124‑1 (MQ=255) gcATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTa > 4:39854/1‑149 (MQ=255) cATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTAt > 2:116299/1‑149 (MQ=255) aggCCATCCTGCAGTAAGATTACTCTTTATTAAGAATTTTTACTGCCTTATGAGTGATATCAGTAATGAGACCATTTACTACCGCTTTGTTATACAGAGCATCATATAACTGATTca < 7:118050/115‑1 (MQ=255) actccATCCTGCAGTAACATTACTCTTTATTAAGAAAATTTACTGCCATATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATAATATAACTGAttaa > 8:118050/4‑115 (MQ=255) tCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAg < 4:15957/57‑1 (MQ=255) tCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAg > 3:15957/1‑57 (MQ=255) | CTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTAT > NC_000913/2349784‑2350059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |