New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1624572 =	48 (1.630)	4 (0.140)	4/252	2.9	8.0%	intergenic (‑75/‑201)	ydeI/ydeJ	hydrogen peroxide resistance OB fold protein; putative periplasmic protein/inactive PncC family protein
	?	NC_000913	1624591 =	46 (1.610)					intergenic (‑94/‑182)	ydeI/ydeJ	hydrogen peroxide resistance OB fold protein; putative periplasmic protein/inactive PncC family protein
Rejected: Frequency below/above cutoff threshold.

AAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGA  >  NC_000913/1624424‑1624717                                                                                                                                                     |                                                                                                                                                  tttgctttttctgtatgctcgtccaatataataattttcaaacatataaatccgattattctgaaaatatgtttaagacttttcaatcttcttaactttagtgagttaaattctctgtatatttgacagctagttggctgattttaaat                                                                                                                                                   >  6:111276‑M1/149‑149 (MQ=255)   aCCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGc                                                                                                                                                 >  1:58195/1‑149 (MQ=255)        tttctgtatgctcgtccaatataataattttcaaacatataaatccgattattctgaaaatatgtttaagacttttcaatcttcttaactttagtgagttaaattctctgtatatttgacagctagttggctgattttaaaTGc                                                                                                                                                 <  2:43223‑M1/3‑1 (MQ=255)        tttctgtatgctcgtccaatataataattttcaaacatataaatccgattattctgaaaatatgtttaagacttttcaatcttcttaactttagtgagttaaattctctgtatatttgacagctagttggctgattttaaaTGc                                                                                                                                                 >  1:43223‑M1/142‑144 (MQ=255)               aTCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTACCTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTtat                                                                                                                                       >  7:75196/1‑147 (MQ=255)                          cATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                          <  2:58195/149‑1 (MQ=255)                           aTAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAAt                                                                                                                         <  4:53421/149‑1 (MQ=255)                           aTAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAAt                                                                                                                         >  5:132094/1‑149 (MQ=255)                              aGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCa                                                                                                                       <  6:108362/148‑1 (MQ=255)                                gCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                          <  4:74224/143‑1 (MQ=255)                                gCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                          >  3:74224/1‑143 (MQ=255)                                   tGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAAc                                                                                                                 >  4:67358/1‑149 (MQ=255)                                       aaGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGc                                                                                                             >  2:151111/1‑149 (MQ=255)                                        aGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGc                                                                                                                     <  4:90189/140‑1 (MQ=255)                                        aGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGc                                                                                                                     >  3:90189/1‑140 (MQ=255)                                        aGAAAACTTGCTAATACAATGGCCTGAAATATCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGACAATTGTTATAAGGAATTTAAAATCAGCCAACTAgat                                                                                                            >  8:106723/1‑147 (MQ=255)                                         gAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTg                                                                                                           <  5:39348/149‑1 (MQ=255)                                         gAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTg                                                                                                           >  6:39348/1‑149 (MQ=255)                                           aaaCTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGt                                                                                                          <  8:38826/148‑1 (MQ=255)                                              cTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCaaa                                                                                                      <  1:151111/149‑1 (MQ=255)                                                  cTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCTTTTCGTTTGACTTATTAAGTCTGTTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAAtata                                                                                                  <  7:106723/149‑1 (MQ=255)                                                        cAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAgaga                                                                                            <  3:67358/149‑1 (MQ=255)                                                             gCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAAttt                                                                                        <  6:132094/148‑1 (MQ=255)                                                                     tttCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTta                                                                                                                                        >  4:124541/1‑92 (MQ=255)                                                                     tttCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTta                                                                                                                                        <  3:124541/92‑1 (MQ=255)                                                                         aTACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGt                                                                           >  8:67815/1‑149 (MQ=255)                                                                                   cTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGtt                                                                          >  2:11072/1‑140 (MQ=255)                                                                                   cTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGtt                                                                          <  1:11072/140‑1 (MQ=255)                                                                                   cTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGAtt                                                                 >  7:61585/1‑149 (MQ=255)                                                                                     aatcttcttaactttagtgagttaaattctctgtatatttgacagctagttggctgattttaaaTGCCAATTGTTATAAGGCATTTaa                                                                                                                            >  7:21507‑M1/65‑88 (MQ=255)                                                                                     aatcttcttaactttagtgagttaaattctctgtatatttgacagctagttggctgattttaaaTGCCAATTGTTATAAGGCATTTaa                                                                                                                            <  8:21507‑M1/24‑1 (MQ=255)                                                                                      aaTTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGa                                                               >  1:148054/1‑148 (MQ=255)                                                                                       aTTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGaaa                                                             <  7:63300/149‑1 (MQ=255)                                                                                                        ttattaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATAtttt                                            >  8:124381/1‑149 (MQ=255)                                                                                                         tattaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATAtttt                                            >  2:157270/1‑148 (MQ=255)                                                                                                           ttaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCa                                          <  8:61585/148‑1 (MQ=255)                                                                                                           ttaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCa                                          <  2:148054/148‑1 (MQ=255)                                                                                                           ttaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCAAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATAtttt                                            >  6:21138/1‑146 (MQ=255)                                                                                                             aaGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGa                                        <  7:67815/148‑1 (MQ=255)                                                                                                                  tctgtatatttgacagctagttggctgattttaaaTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                          <  4:21969‑M1/26‑1 (MQ=255)                                                                                                                  tctgtatatttgacagctagttggctgattttaaaTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                          >  3:21969‑M1/36‑61 (MQ=255)                                                                                                                     ttGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGa                               >  1:9566/1‑149 (MQ=255)                                                                                                                         tATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTta                           >  5:94147/1‑149 (MQ=255)                                                                                                                              ttATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGt                      >  5:39556/1‑149 (MQ=255)                                                                                                                               tataATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGt                      <  8:75196/148‑1 (MQ=255)                                                                                                                                    ttGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGaaa                <  6:39556/149‑1 (MQ=255)                                                                                                                                         aaaTAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGTTTGAAAAGTCTTAAACATAtt                                              >  2:53799/1‑114 (MQ=255)                                                                                                                                         aaaTAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGTTTGAAAAGTCTTAAACATAtt                                              <  1:53799/114‑1 (MQ=255)                                                                                                                                         aaaTAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAattat           >  2:115974/1‑149 (MQ=255)                                                                                                                                          aaTAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAattatt          <  7:124381/149‑1 (MQ=255)                                                                                                                                              ggcatatTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGaaaa               <  8:47057/137‑1 (MQ=255)                                                                                                                                              aGAATATTGCCAATTGTTATAAGTCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCATAATAATCGGATTTATATGTTTGAAAATTATTatat      <  5:21138/149‑1 (MQ=255)                                                                                                                                              aGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTAATAATAATCGTATTTATATGTTTGAAAatagatagt       >  7:47057/1‑141 (MQ=255)                                                                                                                                                  tatTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGa  <  2:9566/149‑1 (MQ=255)                                                                                                                                                  tatTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGa  <  1:157270/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGA  >  NC_000913/1624424‑1624717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.