New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1624572 =	48 (1.630)	4 (0.140)	4/252	2.9	8.0%	intergenic (‑75/‑201)	ydeI/ydeJ	hydrogen peroxide resistance OB fold protein; putative periplasmic protein/inactive PncC family protein
	?	NC_000913	1624591 =	46 (1.610)					intergenic (‑94/‑182)	ydeI/ydeJ	hydrogen peroxide resistance OB fold protein; putative periplasmic protein/inactive PncC family protein
Rejected: Frequency below/above cutoff threshold.

CATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGACGAGCATACAGAAAAAGCAAA  >  NC_000913/1624449‑1624738                                                                                                                                               |                                                                                                                                                    cATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                                               <  2:58195/149‑1 (MQ=255)  aTAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAAt                                                                                                                                              <  4:53421/149‑1 (MQ=255)  aTAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAAt                                                                                                                                              >  5:132094/1‑149 (MQ=255)     aGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCa                                                                                                                                            <  6:108362/148‑1 (MQ=255)       gCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                                               <  4:74224/143‑1 (MQ=255)       gCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                                               >  3:74224/1‑143 (MQ=255)          tGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAAc                                                                                                                                      >  4:67358/1‑149 (MQ=255)              aaGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGc                                                                                                                                  >  2:151111/1‑149 (MQ=255)               aGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGc                                                                                                                                          >  3:90189/1‑140 (MQ=255)               aGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGc                                                                                                                                          <  4:90189/140‑1 (MQ=255)               aGAAAACTTGCTAATACAATGGCCTGAAATATCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGACAATTGTTATAAGGAATTTAAAATCAGCCAACTAgat                                                                                                                                 >  8:106723/1‑147 (MQ=255)                gAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTg                                                                                                                                >  6:39348/1‑149 (MQ=255)                gAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTg                                                                                                                                <  5:39348/149‑1 (MQ=255)                  aaaCTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGt                                                                                                                               <  8:38826/148‑1 (MQ=255)                     cTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCaaa                                                                                                                           <  1:151111/149‑1 (MQ=255)                         cTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCTTTTCGTTTGACTTATTAAGTCTGTTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAAtata                                                                                                                       <  7:106723/149‑1 (MQ=255)                               cAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAgaga                                                                                                                 <  3:67358/149‑1 (MQ=255)                                    gCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAAttt                                                                                                             <  6:132094/148‑1 (MQ=255)                                                aTACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGt                                                                                                >  8:67815/1‑149 (MQ=255)                                                          cTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGtt                                                                                               >  2:11072/1‑140 (MQ=255)                                                          cTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGtt                                                                                               <  1:11072/140‑1 (MQ=255)                                                          cTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGAtt                                                                                      >  7:61585/1‑149 (MQ=255)                                                            aatcttcttaactttagtgagttaaattctctgtatatttgacagctagttggctgattttaaaTGCCAATTGTTATAAGGCATTTaa                                                                                                                                                 >  7:21507‑M1/65‑88 (MQ=255)                                                            aatcttcttaactttagtgagttaaattctctgtatatttgacagctagttggctgattttaaaTGCCAATTGTTATAAGGCATTTaa                                                                                                                                                 <  8:21507‑M1/24‑1 (MQ=255)                                                             aaTTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGa                                                                                    >  1:148054/1‑148 (MQ=255)                                                              aTTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGaaa                                                                                  <  7:63300/149‑1 (MQ=255)                                                                               ttattaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATAtttt                                                                 >  8:124381/1‑149 (MQ=255)                                                                                tattaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATAtttt                                                                 >  2:157270/1‑148 (MQ=255)                                                                                  ttaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCa                                                               <  8:61585/148‑1 (MQ=255)                                                                                  ttaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCa                                                               <  2:148054/148‑1 (MQ=255)                                                                                  ttaAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCAAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATAtttt                                                                 >  6:21138/1‑146 (MQ=255)                                                                                    aaGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGa                                                             <  7:67815/148‑1 (MQ=255)                                                                                         tctgtatatttgacagctagttggctgattttaaaTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                                               <  4:21969‑M1/26‑1 (MQ=255)                                                                                         tctgtatatttgacagctagttggctgattttaaaTGCCAATTGTTATAAGGCATTTaaaa                                                                                                                                               >  3:21969‑M1/36‑61 (MQ=255)                                                                                            ttGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGa                                                    >  1:9566/1‑149 (MQ=255)                                                                                                tATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTta                                                >  5:94147/1‑149 (MQ=255)                                                                                                     ttATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGt                                           >  5:39556/1‑149 (MQ=255)                                                                                                      tataATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGt                                           <  8:75196/148‑1 (MQ=255)                                                                                                           ttGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGaaa                                     <  6:39556/149‑1 (MQ=255)                                                                                                                aaaTAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGTTTGAAAAGTCTTAAACATAtt                                                                   >  2:53799/1‑114 (MQ=255)                                                                                                                aaaTAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGTTTGAAAAGTCTTAAACATAtt                                                                   <  1:53799/114‑1 (MQ=255)                                                                                                                aaaTAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAattat                                >  2:115974/1‑149 (MQ=255)                                                                                                                 aaTAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAattatt                               <  7:124381/149‑1 (MQ=255)                                                                                                                     ttttaaatgccttataacaattggcaTTTAAAATCAGCCAACTAGCTGTCAAATATACaga                                                                                                                   <  4:21969‑M2/35‑1 (MQ=255)                                                                                                                     ttttaaatgccttataacaattggcaTTTAAAATCAGCCAACTAGCTGTCAAATATACaga                                                                                                                   >  3:21969‑M2/27‑61 (MQ=255)                                                                                                                     ggcatatTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGaaaa                                    <  8:47057/137‑1 (MQ=255)                                                                                                                     aGAATATTGCCAATTGTTATAAGTCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCATAATAATCGGATTTATATGTTTGAAAATTATTatat                           <  5:21138/149‑1 (MQ=255)                                                                                                                     aGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTAATAATAATCGTATTTATATGTTTGAAAatagatagt                            >  7:47057/1‑141 (MQ=255)                                                                                                                       ttaaatgccttataacaattggcaTTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGAtt                                                                                      >  7:21507‑M2/25‑88 (MQ=255)                                                                                                                       ttaaatgccttataacaattggcaTTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGAtt                                                                                      <  8:21507‑M2/64‑1 (MQ=255)                                                                                                                         tatTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGa                       <  2:9566/149‑1 (MQ=255)                                                                                                                         tatTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGa                       <  1:157270/149‑1 (MQ=255)                                                                                                                                        taAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGa                       <  3:21642/134‑1 (MQ=255)                                                                                                                                        taAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGa                       >  4:21642/1‑134 (MQ=255)                                                                                                                                            gcaTTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGACGAGCATACAGaaa         >  1:43223‑M2/4‑144 (MQ=255)                                                                                                                                            gcaTTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGACGAGCATACAGaaa         <  2:43223‑M2/141‑1 (MQ=255)                                                                                                                                              aTTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGACGAGCATACAGAAAAAGCaaa  >  6:111276‑M2/2‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                    CATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTAACTCCTTAATTGCGTTTGGTTTGACTTATTAAGTCTGGTTGCTATTTTTATAATTGCCAAATAAGAATATTGCCAATTGTTATAAGGCATTTAAAATCAGCCAACTAGCTGTCAAATATACAGAGAATTTAACTCACTAAAGTTAAGAAGATTGAAAAGTCTTAAACATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGACGAGCATACAGAAAAAGCAAA  >  NC_000913/1624449‑1624738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.