| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 755,308 | Δ102 bp | coding (132‑233/390 nt) | sdhC → | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 755308 | 755409 | 102 | 47 [0] | [0] 46 | sdhC | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 755307 | 0 (0.000) | 39 (1.160) | 37/222 | 0.1 | 100% | coding (131/390 nt) | sdhC | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| ? | NC_000913 | 755410 = | 0 (0.000) | coding (234/390 nt) | sdhC | succinate dehydrogenase, membrane subunit, binds cytochrome b556 | |||||
GCATGTGGGCGTTATTCATGATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTGCTGTGGCTTCTGGGTACCAGCCTCTCTTCCCCTGAAGGTTTCGAGCAAGCTTCCGCGATTATGGGCAGCTTCTTCGTCAAATTTATCATGTGGGGCATCCTTACCGCTCTGGCGTATCACGTCGTCGTAGGTATTCGCCACAT > NC_000913/755160‑755451 | gCATGTGGGCGTTATTCATGATAAGAAATGTGAAAAAACAAAGCCCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCT > 3:76191‑M1/1‑148 (MQ=255) cATGTGGGCGTTATTCATGATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTta > 5:100591‑M1/1‑147 (MQ=255) ttCATGATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgt > 4:57554‑M1/1‑134 (MQ=255) tCATGATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctct < 3:76285‑M1/142‑10 (MQ=255) tCATGATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctct > 4:76285‑M1/1‑133 (MQ=255) cATGATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCAACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtat < 6:79768‑M1/148‑17 (MQ=255) aTGATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatca > 7:121299‑M1/1‑131 (MQ=255) gATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggc > 1:15612‑M1/1‑129 (MQ=255) gATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggc < 2:15612‑M1/141‑13 (MQ=255) aTGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgta < 3:57554‑M1/149‑29 (MQ=255) tgtgAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtag < 2:92497‑M1/149‑30 (MQ=255) tgtgAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgcactggcgtatcacgtcgtcgtag < 3:60840‑M1/149‑30 (MQ=255) gTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgat > 2:135507‑M1/1‑101 (MQ=255) ttAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatg > 4:134073‑M1/1‑100 (MQ=255) ttAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatga < 4:76191‑M1/147‑48 (MQ=255) aTCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggat < 2:188111‑M1/149‑53 (MQ=255) gACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCAATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtatgtattcgccacatgatgatggatttt < 8:121299‑M1/147‑56 (MQ=255) aTCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaa > 2:110848‑M1/1‑80 (MQ=255) aTCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaa < 1:110848‑M1/147‑68 (MQ=255) gTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacat > 4:62441‑M1/1‑75 (MQ=255) cccATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcg < 1:135507‑M1/148‑78 (MQ=255) ccATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcg > 1:210221‑M1/1‑70 (MQ=255) ccATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatc > 5:31869‑M1/1‑70 (MQ=255) ccATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatc < 6:31869‑M1/87‑18 (MQ=255) aCGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgg < 3:62441‑M1/148‑84 (MQ=255) gATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaac < 6:100591‑M1/149‑90 (MQ=255) ttCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacat > 7:73295‑M1/1‑49 (MQ=255) gcgTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatctccttt < 3:134073‑M1/149‑110 (MQ=255) cgTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcg > 6:99782‑M1/1‑39 (MQ=255) cgTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcg < 5:99782‑M1/121‑83 (MQ=255) ggTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagc < 1:139670‑M1/113‑82 (MQ=255) ggTGTGATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagc > 2:139670‑M1/1‑32 (MQ=255) tgATCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatctcctttgttattactgtc < 2:210221‑M1/149‑122 (MQ=255) aTCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctcc > 5:110589‑M1/1‑26 (MQ=255) aTCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctcc < 6:110589‑M1/120‑95 (MQ=255) tCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatc < 4:45441‑M1/128‑104 (MQ=255) tCACCTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatc > 3:45441‑M1/1‑25 (MQ=255) ccTTTGTTGCAGTGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacgttcgaagcgggtaaacgctccgccaaaatctcctttgttattactgtcgtgctt > 7:112280‑M1/1‑22 (MQ=255) tGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatctcctttgttattactgtcgtgcttt < 3:15330‑M1/138‑129 (MQ=255) tGGGCATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatctcctttgttattactgtcgtgcttt > 4:15330‑M1/1‑10 (MQ=255) cATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcggg < 7:151421‑M1/90‑85 (MQ=255) cATCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcggg > 8:151421‑M1/1‑6 (MQ=255) aTCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatctcctttgttattactgtcgtgctttcacttctcgcaggagt > 4:93845‑M1/1‑5 (MQ=255) aTCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatctcctttgttattactgtcgtgctttcacttctcgcaggagt > 4:91679‑M1/1‑5 (MQ=255) aTCCTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagc > 6:26518‑M1/1‑5 (MQ=255) ccTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgccaaaatctcctttgttattactgtcgtgctttcacttctcgca > 7:128185‑M1/1‑3 (MQ=255) ccTtaccgctctggcgtatcacgtcgtcgtaggtattcgccacatgatgatggattttggctatctggaagaaacattcgaagcgggtaaacgctccgcaaaaatctcctttgttattactgtcgtgctttcacttctcgca < 8:128185‑M1/142‑140 (MQ=255) | GCATGTGGGCGTTATTCATGATAAGAAATGTGAAAAAACAAAGACCTGTTAATCTGGACCTACAGACCATCCGGTTCCCCATCACGGCGATAGCGTCCATTCTCCATCGCGTTTCCGGTGTGATCACCTTTGTTGCAGTGGGCATCCTGCTGTGGCTTCTGGGTACCAGCCTCTCTTCCCCTGAAGGTTTCGAGCAAGCTTCCGCGATTATGGGCAGCTTCTTCGTCAAATTTATCATGTGGGGCATCCTTACCGCTCTGGCGTATCACGTCGTCGTAGGTATTCGCCACAT > NC_000913/755160‑755451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |