New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1825935	28 (0.870)	8 (0.270)	8/236	2.0	23.0%	intergenic (‑310/+20)	spy/astE	periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase
	?	NC_000913	= 1825939	28 (0.960)					intergenic (‑314/+16)	spy/astE	periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase

AGAGTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAAT  >  NC_000913/1825797‑1826078                                                                                                                                               |                                                                                                                                            agagTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgc                                                                                                                                       >  4:81807‑M2/1‑143 (MQ=255)  gagTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgc                                                                                                                                       <  1:153042‑M2/148‑7 (MQ=255)  gagTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgc                                                                                                                                       >  2:153042‑M2/1‑142 (MQ=255)          agagaATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATt                                                                                                                                            >  5:157948‑M2/1‑134 (MQ=255)          agagaATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATt                                                                                                                                            <  6:157948‑M2/135‑2 (MQ=255)                  ttACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCtt                                                                                                                       <  4:132254/148‑1 (MQ=255)                           gatgatTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTc                                                                                                               >  5:120567/1‑147 (MQ=255)                           gatgatTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTc                                                                                                               >  3:34042/1‑147 (MQ=255)                                      agagATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATc                                                                                                    <  8:50120/147‑1 (MQ=255)                                      agagATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATc                                                                                                    >  7:50120/1‑147 (MQ=255)                                         gaTTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCcgcg                                                                                               >  1:98918/1‑149 (MQ=255)                                               gaagaaCTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAAt                                                                                         >  5:111851/1‑149 (MQ=255)                                                    aCTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCaa                                                                                    <  2:98918/149‑1 (MQ=255)                                                                       gATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagt                                                                  <  2:121843‑M2/148‑76 (MQ=255)                                                                          aaataaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGaa                                                               >  5:124189/1‑148 (MQ=255)                                                                          aaataaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGaa                                                               >  7:19153/1‑148 (MQ=255)                                                                             taaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATaa                                                            >  1:41625/1‑148 (MQ=255)                                                                             taaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATaa                                                            >  1:136478/1‑148 (MQ=255)                                                                              aaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATaa                                                            <  6:42912/147‑1 (MQ=255)                                                                              aaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATaa                                                            >  5:42912/1‑147 (MQ=255)                                                                                  cAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAgg                                                                  <  7:20325/137‑1 (MQ=255)                                                                                  cAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAgg                                                                  >  8:20325/1‑137 (MQ=255)                                                                                                  aTCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatctct                                       >  1:121843‑M2/1‑46 (MQ=255)                                                                                                    cTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTaa                                                                                                                                 >  7:74133/1‑56 (MQ=255)                                                                                                    cTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTaa                                                                                                                                 <  8:74133/56‑1 (MQ=255)                                                                                                       tATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTa                                     <  8:19153/145‑1 (MQ=255)                                                                                                       tATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACg                                   <  6:120567/147‑1 (MQ=255)                                                                                                             tttATAAGAAAGCAACTTAATACCCGCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttat                                                                                      >  4:10151‑M2/1‑35 (MQ=255)                                                                                                             tttATAAGAAAGCAACTTAATACCCGCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttat                                                                                      <  3:10151‑M2/90‑56 (MQ=255)                                                                                                                 taAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTc                        <  4:34042/148‑1 (MQ=255)                                                                                                                     aaaGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTa                                                 >  4:131665/1‑119 (MQ=255)                                                                                                                     aaaGCAAATTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTa                                                 <  3:131665/119‑1 (MQ=255)                                                                                                                         cAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTc               <  2:41625/149‑1 (MQ=255)                                                                                                                            cTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATa                                                             <  4:29039/100‑1 (MQ=255)                                                                                                                            cTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATa                                                             >  3:29039/1‑100 (MQ=255)                                                                                                                               aaTACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTgc           <  2:136478/147‑1 (MQ=255)                                                                                                                                   cccGCAGATTGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatctctgcaaaatcatcgtgttgtaatattctc            >  5:35480‑M2/1‑13 (MQ=255)                                                                                                                                   cccGCAGATTGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatctctgcaaaatcatcgtgttgtaatattctc            <  6:35480‑M2/142‑130 (MQ=255)                                                                                                                                      gCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatct                                         <  2:51250‑M2/110‑101 (MQ=255)                                                                                                                                      gCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatct                                         >  1:51250‑M2/1‑10 (MQ=255)                                                                                                                                      gCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAAt  <  6:111851/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            AGAGTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAAT  >  NC_000913/1825797‑1826078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.