New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 182593528 (0.870)8 (0.270) 8/236 2.0 23.0% intergenic (‑310/+20) spy/astE periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase
?NC_000913 = 1825939 28 (0.960)intergenic (‑314/+16) spy/astE periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase

AGAGTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAAT  >  NC_000913/1825797‑1826078
                                                                                                                                              |                                                                                                                                           
agagTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgc                                                                                                                                       >  4:81807‑M2/1‑143 (MQ=255)
 gagTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgc                                                                                                                                       <  1:153042‑M2/148‑7 (MQ=255)
 gagTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgc                                                                                                                                       >  2:153042‑M2/1‑142 (MQ=255)
         agagaATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATt                                                                                                                                            >  5:157948‑M2/1‑134 (MQ=255)
         agagaATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATt                                                                                                                                            <  6:157948‑M2/135‑2 (MQ=255)
                 ttACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCtt                                                                                                                       <  4:132254/148‑1 (MQ=255)
                          gatgatTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTc                                                                                                               >  5:120567/1‑147 (MQ=255)
                          gatgatTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTc                                                                                                               >  3:34042/1‑147 (MQ=255)
                                     agagATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATc                                                                                                    <  8:50120/147‑1 (MQ=255)
                                     agagATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATc                                                                                                    >  7:50120/1‑147 (MQ=255)
                                        gaTTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCcgcg                                                                                               >  1:98918/1‑149 (MQ=255)
                                              gaagaaCTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAAt                                                                                         >  5:111851/1‑149 (MQ=255)
                                                   aCTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCaa                                                                                    <  2:98918/149‑1 (MQ=255)
                                                                      gATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagt                                                                  <  2:121843‑M2/148‑76 (MQ=255)
                                                                         aaataaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGaa                                                               >  5:124189/1‑148 (MQ=255)
                                                                         aaataaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGaa                                                               >  7:19153/1‑148 (MQ=255)
                                                                            taaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATaa                                                            >  1:41625/1‑148 (MQ=255)
                                                                            taaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATaa                                                            >  1:136478/1‑148 (MQ=255)
                                                                             aaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATaa                                                            <  6:42912/147‑1 (MQ=255)
                                                                             aaaGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATaa                                                            >  5:42912/1‑147 (MQ=255)
                                                                                 cAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAgg                                                                  <  7:20325/137‑1 (MQ=255)
                                                                                 cAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAgg                                                                  >  8:20325/1‑137 (MQ=255)
                                                                                                 aTCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatctct                                       >  1:121843‑M2/1‑46 (MQ=255)
                                                                                                   cTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTaa                                                                                                                                 >  7:74133/1‑56 (MQ=255)
                                                                                                   cTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTaa                                                                                                                                 <  8:74133/56‑1 (MQ=255)
                                                                                                      tATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTa                                     <  8:19153/145‑1 (MQ=255)
                                                                                                      tATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACg                                   <  6:120567/147‑1 (MQ=255)
                                                                                                            tttATAAGAAAGCAACTTAATACCCGCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttat                                                                                      >  4:10151‑M2/1‑35 (MQ=255)
                                                                                                            tttATAAGAAAGCAACTTAATACCCGCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttat                                                                                      <  3:10151‑M2/90‑56 (MQ=255)
                                                                                                                taAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTc                        <  4:34042/148‑1 (MQ=255)
                                                                                                                    aaaGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTa                                                 >  4:131665/1‑119 (MQ=255)
                                                                                                                    aaaGCAAATTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTa                                                 <  3:131665/119‑1 (MQ=255)
                                                                                                                        cAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTc               <  2:41625/149‑1 (MQ=255)
                                                                                                                           cTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATa                                                             <  4:29039/100‑1 (MQ=255)
                                                                                                                           cTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATa                                                             >  3:29039/1‑100 (MQ=255)
                                                                                                                              aaTACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTgc           <  2:136478/147‑1 (MQ=255)
                                                                                                                                  cccGCAGATTGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatctctgcaaaatcatcgtgttgtaatattctc            >  5:35480‑M2/1‑13 (MQ=255)
                                                                                                                                  cccGCAGATTGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatctctgcaaaatcatcgtgttgtaatattctc            <  6:35480‑M2/142‑130 (MQ=255)
                                                                                                                                     gCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatct                                         <  2:51250‑M2/110‑101 (MQ=255)
                                                                                                                                     gCAGAATGATttctgcgggtattaagttgctttcttataaattaatacagattaatcctggttatttgctttatttatcaccagtcatccggtatagttcttcataatct                                         >  1:51250‑M2/1‑10 (MQ=255)
                                                                                                                                     gCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAAt  <  6:111851/149‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                           
AGAGTGATGAGAGAATATTACAACACGATGATTTTGCAGAGATTATGAAGAACTATACCGGATGACTGGTGATAAATAAAGCAAATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAAT  >  NC_000913/1825797‑1826078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.