mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.4% | 122.7 / 89.2 | 106 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2942873 = | 95 (0.950) | 6 (0.060) | 6/268 | 8.3 | 6.0% | noncoding (178/206 nt) | gcvB | sRNA antisense regulator represses oppA, dppA, gltI and livJ expression, Hfq‑dependent |
| ? | NC_000913 | 2942895 = | 97 (1.030) | noncoding (200/206 nt) | gcvB | sRNA antisense regulator represses oppA, dppA, gltI and livJ expression, Hfq‑dependent | |||||
| * | ? | NC_000913 | 3979290 = | 104 (1.040) | 4 (0.040) | 4/268 | 9.3 | 3.9% | coding (690/1353 nt) | wzyE | putative ECA polysaccharide chain elongation protein |
| ? | NC_000913 | = 3979286 | 101 (1.070) | coding (686/1353 nt) | wzyE | putative ECA polysaccharide chain elongation protein | |||||
| * | ? | NC_000913 | = 3556095 | 111 (1.110) | 4 (0.040) | 4/270 | 9.3 | 3.7% | coding (755/1017 nt) | rtcA | RNA 3'‑terminal phosphate cyclase |
| ? | NC_000913 | = 3556109 | 100 (1.060) | coding (741/1017 nt) | rtcA | RNA 3'‑terminal phosphate cyclase | |||||
| * | ? | NC_000913 | = 288413 | 79 (0.790) | 4 (0.040) | 4/266 | 9.3 | 5.3% | coding (750/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 288439 | 69 (0.740) | coding (724/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.040) | 4/266 | 9.3 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 474269 = | NA (NA) | 4 (0.040) | 4/272 | 9.4 | NA | intergenic (+17/+32) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 |
| ? | NC_000913 | 474296 = | NA (NA) | intergenic (+44/+5) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 | |||||
| * | ? | NC_000913 | = 401994 | 88 (0.880) | 4 (0.040) | 4/274 | 9.4 | 4.7% | coding (248/1416 nt) | phoA | bacterial alkaline phosphatase |
| ? | NC_000913 | = 402017 | 79 (0.820) | coding (271/1416 nt) | phoA | bacterial alkaline phosphatase | |||||
| * | ? | NC_000913 | = 2644481 | 92 (0.920) | 4 (0.040) | 4/276 | 9.5 | 4.5% | coding (384/432 nt) | ndk | multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase |
| ? | NC_000913 | = 2644503 | 80 (0.830) | coding (362/432 nt) | ndk | multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase | |||||
| * | ? | NC_000913 | = 4155023 | 137 (1.370) | 4 (0.040) | 4/282 | 9.6 | 2.9% | coding (23/1005 nt) | argC | N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding |
| ? | NC_000913 | = 4155043 | 132 (1.330) | coding (43/1005 nt) | argC | N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 3688799 = | 127 (1.270) | 3 (0.030) | 3/270 | 9.9 | 2.3% | coding (375/3474 nt) | bcsC | cellulose synthase subunit |
| ? | NC_000913 | 3688841 = | 137 (1.450) | coding (333/3474 nt) | bcsC | cellulose synthase subunit | |||||