New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4404334 =45 (1.320)5 (0.150) 5/248 3.1 10.1% intergenic (+30/‑52) hflC/yjeT HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein
?NC_000913 4404361 = 46 (1.420)intergenic (+57/‑25) hflC/yjeT HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGAGATCATCTTCTTCCATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4404482‑4404334
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtggTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGGAAGAAGATGATCTCTGC  >  NC_000913/4404361‑4404483
                                                                                                                                                                                                                                                                                
CAGAGATCATCTTCTTCCATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGG                                                                                                                             >  5:29865/1‑149
       CATCTTCTTACATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGG                                                                                                                             <  7:135502/142‑1
       CATCTTCTTACATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGG                                                                                                                             >  8:135502/1‑142
                                                                                          AATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTT                                                               <  7:38894/121‑1
                                                                                          AATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTT                                                               >  8:38894/1‑121
                                                                                                                AAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAG                                             <  5:107779/117‑1
                                                                                                                AAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAG                                             >  6:107779/1‑117
                                                                                                                            ACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGAGAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGGAAGAAGATGATCTCTGC  >  3:8475/1‑148
                                                                                                                                                                                                                                                                                
CAGAGATCATCTTCTTCCATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4404482‑4404334
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtggTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGGAAGAAGATGATCTCTGC  >  NC_000913/4404361‑4404483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.