New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4404334 =	45 (1.320)	5 (0.150)	5/248	3.1	10.1%	intergenic (+30/‑52)	hflC/yjeT	HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein
	?	NC_000913	4404361 =	46 (1.420)					intergenic (+57/‑25)	hflC/yjeT	HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGCTTCTCTGGCAATCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGGAAGAAGATGATCTCTGCGATGACCAATTTG  >  NC_000913/4404214‑4404496                                                                                                                                                    |                                                                                                                                        cAGCTTCTCTGGCAATCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGtt                                                                                                                                        >  1:61516/1‑149 (MQ=255)          tGGCAATCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGttttctttttc                                                                                                                               >  3:127762/1‑149 (MQ=255)          tGGCAATCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGttttcttt                                                                                                                                  >  7:65944/1‑146 (MQ=255)          tGGCAATCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGttttcttt                                                                                                                                  <  8:65944/146‑1 (MQ=255)            tcAATCAGGACGTGATGGTCATGAGCCCGGATATCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGTTCAATAACGCCACCGCATCCTCAGGGATGTCGGTTGTTTTCTTTTTCta                                                                                                                             <  5:162647/148‑1 (MQ=255)            gCAATCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGttttcttttt                                                                                                                                <  3:114882/146‑1 (MQ=255)              aaTCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGttttcttttt                                                                                                                                >  1:22812/1‑144 (MQ=255)              aaTCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGttttcttttt                                                                                                                                <  2:22812/144‑1 (MQ=255)                  aGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGa                                                                                                                       >  2:141887/1‑149 (MQ=255)                     aCGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATaa                                                                                                                    <  8:96797/149‑1 (MQ=255)                      cGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATaat                                                                                                                   <  4:14952/149‑1 (MQ=255)                         gATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCta                                                                                                                             >  2:8975/1‑136 (MQ=255)                         gATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCta                                                                                                                             <  1:8975/136‑1 (MQ=255)                         gATGGTCATGAGCCCGGATAGCGATTTCTTCCGCAACAAGAAGACGCCGACTTCCGCAACGCCTAAATATTACGACTGCGGTACACGTCAATAAAGCCACCGCATCCTCAGGGATCTCGGTGGTTTTCTTTATCAATAAGGATaatgaa                                                                                                                >  8:2107/1‑149 (MQ=255)                          aTGGTCATGAGCACGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATaatgaat                                                                                                               <  7:2107/149‑1 (MQ=255)                                aTGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCTGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCta                                                                                                                             >  2:66101/1‑129 (MQ=255)                                aTGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCTGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCta                                                                                                                             <  1:66101/129‑1 (MQ=255)                                 tGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATaa                                                                                                                          <  7:31523/131‑1 (MQ=255)                                 tGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGAGGTCGGTGGTTTTCTTTTTCTATaa                                                                                                                          >  8:31523/1‑131 (MQ=255)                                       cGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATc                                                                                                  >  5:138586/1‑149 (MQ=255)                                                aTTTCTTCCGCTATATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGgcg                                                                                         >  8:138187/1‑149 (MQ=255)                                                aTTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGgcg                                                                                         >  1:135101/1‑149 (MQ=255)                                                     ttcCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATaatgaa                                                                                                                >  6:78932/1‑121 (MQ=255)                                                     ttcCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATaatgaa                                                                                                                <  5:78932/121‑1 (MQ=255)                                                            aCATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAGTGAAtt                                                                                                          <  6:65367/120‑1 (MQ=255)                                                            aCATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAGTGAAtt                                                                                                          >  5:65367/1‑120 (MQ=255)                                                             taTGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGtt                                                                             <  7:138187/147‑1 (MQ=255)                                                               tGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTg                                                                          <  4:127762/149‑1 (MQ=255)                                                               tGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTg                                                                          <  2:61516/149‑1 (MQ=255)                                                                      gCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTg                                                                    >  4:93000/1‑148 (MQ=255)                                                                                  aaCGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGc                                                       <  1:141887/149‑1 (MQ=255)                                                                                        ttAATATAACGACTGCGGTACAGGTCAATAAAGTCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGttt                                                                            <  2:92364/122‑1 (MQ=255)                                                                                        ttAATATAACGACTGCGGTACAGGTCAATAAAGTCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGttt                                                                            >  1:92364/1‑122 (MQ=255)                                                                                           atatAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCttt                                              <  3:93000/149‑1 (MQ=255)                                                                                            tataACGCCTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTa                                             <  3:97898/149‑1 (MQ=255)                                                                                              taACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTTGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTAc                                            <  5:144836/148‑1 (MQ=255)                                                                                                  gACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATaatgaat                                                                                                               >  4:101363/1‑77 (MQ=255)                                                                                                  gACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATaatgaat                                                                                                               <  3:101363/77‑1 (MQ=255)                                                                                                                  aaTAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAg                                                                <  4:59287/108‑1 (MQ=255)                                                                                                                  aaTAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAg                                                                >  3:59287/1‑108 (MQ=255)                                                                                                                        gCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGGAAGAAGATGATctct                 <  6:138586/149‑1 (MQ=255)                                                                                                                         ccACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGTAAGAAgatg                       >  7:135502/1‑142 (MQ=255)                                                                                                                         ccACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGTAAGAAgatg                       <  8:135502/142‑1 (MQ=255)                                                                                                                         ccACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGGAAGAAGATGATCTCTg                <  5:29865/149‑1 (MQ=255)                                                                                                                                   cTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAAATCGACAAACTGGCTGGCGCTTGCACTGGTTTTGGTACTGGAAGGTTTAGTGCCGATGCTTTAACCGAAGGCATGGAAGAAGATGATCTCTGCGATGACCaa      >  7:15088/1‑149 (MQ=255)                                                                                                                                        ggATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGGAAGAAGATGATCTCTGCGATGACCAATTTg  <  2:135101/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                        CAGCTTCTCTGGCAATCAGGACGTGATGGTCATGAGCCCGGATAGCGATTTCTTCCGCTACATGAAGACGCCGACTTCCGCAACGCGTTAATATAACGACTGCGGTACAGGTCAATAAAGCCACCGCATCCTCAGGGATGTCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTACTGGAAGGTTTAGGGCCGATGCTTTACCCGAAGGCATGGAAGAAGATGATCTCTGCGATGACCAATTTG  >  NC_000913/4404214‑4404496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.