mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 33.9% | 131.6 / 98.8 | 110 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4171803 | 102 (1.190) | 15 (0.180) | 5/278 | 6.5 | 11.6% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213162 | 128 (1.510) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4040683 | 116 (1.350) | 15 (0.180) | 5/278 | 6.5 | 11.0% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 128 (1.510) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 3735289 = | 127 (1.480) | 4 (0.050) | 4/268 | 6.8 | 3.2% | coding (311/1179 nt) | xylR | xylose divergent operon transcriptional activator |
| ? | NC_000913 | 3735310 = | 121 (1.480) | coding (332/1179 nt) | xylR | xylose divergent operon transcriptional activator | |||||
| * | ? | NC_000913 | = 1115561 | 82 (0.950) | 4 (0.050) | 4/268 | 6.8 | 5.0% | intergenic (‑71/+101) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | NC_000913 | = 1115571 | 75 (0.920) | intergenic (‑81/+91) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | NC_000913 | 483821 = | 84 (0.980) | 4 (0.050) | 4/268 | 6.8 | 5.4% | coding (583/3150 nt) | acrB | multidrug efflux system protein |
| ? | NC_000913 | 483883 = | 60 (0.730) | coding (521/3150 nt) | acrB | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 3946824 | 20 (0.230) | 4 (0.050) | 4/278 | 6.9 | 6.2% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4171801 | 102 (1.200) | intergenic (+45/‑256) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 4 (0.050) | 4/278 | 6.9 | 3.8% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171803 | 102 (1.190) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 947028 = | 78 (0.910) | 3 (0.040) | 3/254 | 7.1 | 4.3% | intergenic (+9/‑201) | ycaD/ycaM | putative MFS transporter, inner membrane protein/putative transporter |
| ? | NC_000913 | 947064 = | 62 (0.800) | intergenic (+45/‑165) | ycaD/ycaM | putative MFS transporter, inner membrane protein/putative transporter | |||||
| * | ? | NC_000913 | = 3373973 | 116 (1.350) | 3 (0.040) | 3/260 | 7.2 | 2.6% | coding (517/792 nt) | nanR | sialic acid‑inducible nan operon repressor |
| ? | NC_000913 | = 3374015 | 116 (1.460) | coding (475/792 nt) | nanR | sialic acid‑inducible nan operon repressor | |||||
| * | ? | NC_000913 | 3071431 = | 137 (1.590) | 3 (0.040) | 3/266 | 7.2 | 2.3% | intergenic (‑187/+28) | fbaA/pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| ? | NC_000913 | 3071451 = | 125 (1.540) | intergenic (‑207/+8) | fbaA/pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase | |||||