New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2838912 =	41 (1.240)	4 (0.130)	4/240	3.5	9.1%	coding (353/1011 nt)	ascG	asc operon transcriptional repressor; prpBC operon repressor
	?	NC_000913	2838963 =	42 (1.370)					coding (302/1011 nt)	ascG	asc operon transcriptional repressor; prpBC operon repressor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTATGATCGCACCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGT  >  NC_000913/2838773‑2839053                                                                                                                                            |                                                                                                                                              tttATGATCGCACCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGa                                                                                                                                       <  1:56672/148‑1 (MQ=255)   tATGATCGCACCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATc                                                                                                                                     <  1:89928/148‑1 (MQ=255)            aCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGAGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATAc                                                                                                                           >  3:83432/1‑149 (MQ=255)                      aTGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGATGACTGTTCGCGTCAATGCTCTCATCGATCTCATCCACGCATAAAAAACGCGGGTAAATAATGATCGCGTCGCCTCGCAGATCCAGCAGATAATGAATCGCCt                                                                                                                 >  8:137757/1‑149 (MQ=255)                         gctgctGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGgc                                                                                                              >  4:40521/1‑149 (MQ=255)                                   ttGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGTTGTCATCGATCTCATCCACTCTTAATTAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCtcttctt                                                                                                     <  7:137757/148‑1 (MQ=255)                                       gcAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCtcttcttct                                                                                                   <  1:127330/146‑1 (MQ=255)                                       gcAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCtcttcttct                                                                                                   >  2:127330/1‑146 (MQ=255)                                           gcggcgATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGa                                                                                                                                       >  1:72018/1‑106 (MQ=255)                                           gcggcgATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGa                                                                                                                                       <  2:72018/106‑1 (MQ=255)                                                gATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTa                                                                                       >  7:8491/1‑149 (MQ=255)                                                        aCCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGGGTCGCAGCGCAGATCcagcag                                                                                                                               <  8:20776/101‑1 (MQ=255)                                                        aCCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCcagcag                                                                                                                               >  7:20776/1‑101 (MQ=255)                                                               tCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGc                                                                        <  4:83432/149‑1 (MQ=255)                                                               tCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGGAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAg                                                                         <  4:76418/148‑1 (MQ=255)                                                                   cTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACt                                                                    >  4:700/1‑149 (MQ=255)                                                                      aCTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTgcc                                                                 <  8:8491/149‑1 (MQ=255)                                                                       cTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTgccg                                                                >  1:17540/1‑149 (MQ=255)                                                                            cgcgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCt                                                            <  3:40521/148‑1 (MQ=255)                                                                             gcgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGtt                                                                                         >  6:86252/1‑118 (MQ=255)                                                                             gcgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGtt                                                                                         <  5:86252/118‑1 (MQ=255)                                                                             gcgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCtt                                                           >  1:23486/1‑148 (MQ=255)                                                                              cgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCttt                                                          >  8:16344/1‑148 (MQ=255)                                                                                tCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATa                                                                          >  2:42954/1‑130 (MQ=255)                                                                                tCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATa                                                                          <  1:42954/130‑1 (MQ=255)                                                                                         tCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCAt                                              <  3:700/149‑1 (MQ=255)                                                                                           aTCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCaa                                                                            <  4:71814/117‑1 (MQ=255)                                                                                           aTCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCaa                                                                            >  3:71814/1‑117 (MQ=255)                                                                                                    aTCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGc                                     <  2:23486/147‑1 (MQ=255)                                                                                                    aTCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTATGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCAt                                   >  4:92278/1‑149 (MQ=255)                                                                                                        aCGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGaaa                               <  2:17540/149‑1 (MQ=255)                                                                                                        aCGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGa                                 >  6:44459/1‑147 (MQ=255)                                                                                                                 aaaCGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGtt                                                                                         >  7:120185/1‑82 (MQ=255)                                                                                                                 aaaCGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGtt                                                                                         <  8:120185/82‑1 (MQ=255)                                                                                                                 aaaCGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTc                      <  5:44459/149‑1 (MQ=255)                                                                                                                             aTCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAaaataaat          >  1:16799/1‑149 (MQ=255)                                                                                                                              tCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATg         >  1:63909/1‑149 (MQ=255)                                                                                                                                aTGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCttt                                                          >  7:11266/1‑98 (MQ=255)                                                                                                                                aTGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCttt                                                          <  8:11266/98‑1 (MQ=255)                                                                                                                                   aTCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTg    <  2:63909/149‑1 (MQ=255)                                                                                                                                      gcgTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGt  >  5:110907/1‑148 (MQ=255)                                                                                                                                            |                                                                                                                                              TTTATGATCGCACCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGT  >  NC_000913/2838773‑2839053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.