New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2838912 =	41 (1.240)	4 (0.130)	4/240	3.5	9.1%	coding (353/1011 nt)	ascG	asc operon transcriptional repressor; prpBC operon repressor
	?	NC_000913	2838963 =	42 (1.370)					coding (302/1011 nt)	ascG	asc operon transcriptional repressor; prpBC operon repressor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGTACTCTTCGCCGACAGATT  >  NC_000913/2838820‑2839108                                                                                                                                                |                                                                                                                                                  gATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTa                                                                                                                                              >  7:8491/1‑149 (MQ=255)                tCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGc                                                                                                                               <  4:83432/149‑1 (MQ=255)                tCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGGAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAg                                                                                                                                <  4:76418/148‑1 (MQ=255)                    cTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACt                                                                                                                           >  4:700/1‑149 (MQ=255)                       aCTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTgcc                                                                                                                        <  8:8491/149‑1 (MQ=255)                        cTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTgccg                                                                                                                       >  1:17540/1‑149 (MQ=255)                             cgcgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCt                                                                                                                   <  3:40521/148‑1 (MQ=255)                              gcgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGtt                                                                                                                                                >  6:86252/1‑118 (MQ=255)                              gcgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGtt                                                                                                                                                <  5:86252/118‑1 (MQ=255)                              gcgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCtt                                                                                                                  >  1:23486/1‑148 (MQ=255)                               cgTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCttt                                                                                                                 >  8:16344/1‑148 (MQ=255)                                 tCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATa                                                                                                                                 >  2:42954/1‑130 (MQ=255)                                 tCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATa                                                                                                                                 <  1:42954/130‑1 (MQ=255)                                          tCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCAt                                                                                                     <  3:700/149‑1 (MQ=255)                                            aTCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCaa                                                                                                                                   <  4:71814/117‑1 (MQ=255)                                            aTCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCaa                                                                                                                                   >  3:71814/1‑117 (MQ=255)                                                     aTCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGc                                                                                            <  2:23486/147‑1 (MQ=255)                                                     aTCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTATGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCAt                                                                                          >  4:92278/1‑149 (MQ=255)                                                         aCGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGaaa                                                                                      <  2:17540/149‑1 (MQ=255)                                                         aCGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGa                                                                                        >  6:44459/1‑147 (MQ=255)                                                                  aaaCGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGtt                                                                                                                                                <  8:120185/82‑1 (MQ=255)                                                                  aaaCGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGtt                                                                                                                                                >  7:120185/1‑82 (MQ=255)                                                                  aaaCGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTc                                                                             <  5:44459/149‑1 (MQ=255)                                                                              aTCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAaaataaat                                                                 >  1:16799/1‑149 (MQ=255)                                                                               tCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATg                                                                >  1:63909/1‑149 (MQ=255)                                                                                 aTGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCttt                                                                                                                 <  8:11266/98‑1 (MQ=255)                                                                                 aTGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCttt                                                                                                                 >  7:11266/1‑98 (MQ=255)                                                                                    aTCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTg                                                           <  2:63909/149‑1 (MQ=255)                                                                                       gcgTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGt                                                         >  5:110907/1‑148 (MQ=255)                                                                                                cgcagATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTATGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGtt                                               <  3:92278/149‑1 (MQ=255)                                                                                                 gcagATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTtctc                                                                                                              <  5:135421/85‑1 (MQ=255)                                                                                                 gcagATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTtctc                                                                                                              >  6:135421/1‑85 (MQ=255)                                                                                                 gcagATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTg                                              <  2:16799/149‑1 (MQ=255)                                                                                                   agATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGt                                            <  6:110907/149‑1 (MQ=255)                                                                                                     aTCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCa                                          <  7:16344/149‑1 (MQ=255)                                                                                                            agATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCg                                                             <  4:6275/123‑1 (MQ=255)                                                                                                            agATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCg                                                             >  3:6275/1‑123 (MQ=255)                                                                                                                                  cttcttctGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGTACTCTTc             >  4:24924/1‑149 (MQ=255)                                                                                                                                   ttcttctGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTg                                              >  1:20569/1‑115 (MQ=255)                                                                                                                                   ttcttctGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTg                                              <  2:20569/115‑1 (MQ=255)                                                                                                                                   ttcttctGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGTACTCTTCg            >  6:88712/1‑149 (MQ=255)                                                                                                                                     cttctGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGTACTCTTCGc           <  3:24924/148‑1 (MQ=255)                                                                                                                                             cTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGTACTCTTCGCCGACAGAtt  >  2:147422/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  GATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGCAGATCCAGCAGATACTGAATCGCCTGGCGCTCTTCTTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGTACTCTTCGCCGACAGATT  >  NC_000913/2838820‑2839108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.