New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3830353	49 (1.250)	6 (0.160)	6/260	3.8	11.6%	intergenic (+17/‑104)	xanP/yicH	xanthine permease/putative inner membrane‑anchored periplasmic AsmA family protein
	?	NC_000913	= 3830358	46 (1.260)					intergenic (+22/‑99)	xanP/yicH	xanthine permease/putative inner membrane‑anchored periplasmic AsmA family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCGTGTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCT  >  NC_000913/3830205‑3830500                                                                                                                                                     |                                                                                                                                                    ggCGTGTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTaa                                                                                                                                                     <  3:132728/149‑1 (MQ=255)         tcAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTa                                                                                                                                             >  1:16375/1‑149 (MQ=255)         tcAGCAGCCGCTGATTTTGCAGTTTGCAACTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTTATTTTCCCACCAGAAAAACAGTAATTCACTGGCGTCGGTAAGATAATTa                                                                                                                                             >  5:43904/1‑149 (MQ=255)            gcagcCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGTGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAAtt                                                                                                                                              <  7:30334/145‑1 (MQ=255)            gcagcCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAAtt                                                                                                                                              >  8:30334/1‑145 (MQ=255)                      aTTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGtct                                                                                                                                 >  8:9995/1‑148 (MQ=255)                         ttGCAGTTTGCCCCTGAATTGCTGAAAAACGTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGGTGAATCTGATTTTCCCTCCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCAc                                                                                                                              <  6:43904/148‑1 (MQ=255)                            cAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACctct                                                                                                                          <  8:26454/149‑1 (MQ=255)                              gTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCttt                                                                                                                        <  3:126215/149‑1 (MQ=255)                               tttGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAATTATCTTACcgccgccagt                                                                                                                                  <  8:68908/138‑5 (MQ=255)                               tttGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAATTATCTTACcgccgccagt                                                                                                                                  >  7:68908/1‑134 (MQ=255)                                  gCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAAc                                                                                                                     <  8:38821/148‑1 (MQ=255)                                          aTGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGc                                                                                                            <  2:16375/149‑1 (MQ=255)                                               tGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCtt                                                                                                         >  8:119684/1‑147 (MQ=255)                                                 aaaaaCCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGa                                                                                                       <  7:119684/147‑1 (MQ=255)                                                  aaaaCCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGa                                                                                                    >  8:34129/1‑149 (MQ=255)                                                         gCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCCCCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGcgcg                                                                                             >  3:123944/1‑149 (MQ=255)                                                             tcctccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTaaa                                                                                         >  8:51483/1‑149 (MQ=255)                                                              cctccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTgcgc                                                                                              >  3:16398/1‑143 (MQ=255)                                                              cctccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTgcgc                                                                                              <  4:16398/143‑1 (MQ=255)                                                               ctccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAAt                                                                                        <  1:180371/148‑1 (MQ=255)                                                                tccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGa                                                                                                       <  2:7478/132‑1 (MQ=255)                                                                tccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGa                                                                                                       >  1:7478/1‑132 (MQ=255)                                                                tccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCg                                                                                      >  3:129376/1‑149 (MQ=255)                                                                  cGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGt                                                                                     <  2:77029/148‑1 (MQ=255)                                                                         gccgcGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACt                                                                             >  7:41843/1‑149 (MQ=255)                                                                          ccgcGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTc                                                                            >  2:141744/1‑149 (MQ=255)                                                                            gcgggcggTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTccc                                                                          <  4:6707/149‑1 (MQ=255)                                                                                 cggTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtg                                                                     <  7:9995/149‑1 (MQ=255)                                                                                     aTTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCa                                                                 >  1:52049/1‑149 (MQ=255)                                                                                      ttACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTa                                                                       <  8:23075/142‑1 (MQ=255)                                                                                      ttACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCAATGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTa                                                                       >  7:23075/1‑142 (MQ=255)                                                                                          tGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGc                                                                  <  8:87455/143‑1 (MQ=255)                                                                                          tGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGc                                                                  >  7:87455/1‑143 (MQ=255)                                                                                            ccATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCAc                                                           <  6:72441/148‑1 (MQ=255)                                                                                            ccATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCAc                                                           <  3:138255/148‑1 (MQ=255)                                                                                                  tGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATg                                                     >  8:70474/1‑148 (MQ=255)                                                                                                       aaTCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGAc                                               >  1:60697/1‑149 (MQ=255)                                                                                                        aTCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGAc                                               >  2:46070/1‑148 (MQ=255)                                                                                                           tGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCAt                                            >  4:16407/1‑148 (MQ=255)                                                                                                           tGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCAt                                            >  8:144219/1‑148 (MQ=255)                                                                                                                ttCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAAt                                       <  7:51483/148‑1 (MQ=255)                                                                                                                   ccaccaGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTAt                                   >  2:44163/1‑149 (MQ=255)                                                                                                                     accaGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCa                                                                                  <  6:113546/100‑1 (MQ=255)                                                                                                                     accaGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCa                                                                                  >  5:113546/1‑100 (MQ=255)                                                                                                                     accaGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTg                                 <  2:60697/149‑1 (MQ=255)                                                                                                                      ccaGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTgg                                <  7:144219/149‑1 (MQ=255)                                                                                                                      ccaGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTgg                                <  3:16407/149‑1 (MQ=255)                                                                                                                                aGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTAtt                                  >  2:64571/1‑137 (MQ=255)                                                                                                                                aGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTAtt                                  <  1:64571/137‑1 (MQ=255)                                                                                                                                                   tAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGctc   >  6:12452/1‑149 (MQ=255)                                                                                                                                                     aGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGctct  <  7:70474/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGCGTGTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATTCACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCT  >  NC_000913/3830205‑3830500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.