mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 114,510 | 0 | A | T | 22.9% | 68.4 / 15.7 | 35 | intergenic (+23/+12) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| * | NC_000913 | 114,511 | 0 | A | C | 22.9% | 66.2 / 19.3 | 35 | intergenic (+24/+11) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.7% | 80.7 / 21.2 | 44 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 114,506 | 0 | G | T | 22.2% | 83.5 / 16.5 | 36 | intergenic (+19/+16) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| * | NC_000913 | 2,235,837 | 0 | C | . | 22.2% | 43.6 / 10.3 | 18 | coding (573/1236 nt) | preA | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
| * | NC_000913 | 114,507 | 0 | A | T | 21.1% | 76.2 / 18.3 | 38 | intergenic (+20/+15) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| * | NC_000913 | 2,462,881 | 0 | C | . | 21.1% | 40.2 / 10.1 | 19 | intergenic (+235/‑131) | fadL/yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 910890 = | 1956 (48.320) | 33 (0.860) | 21/240 | 0.8 | 1.7% | coding (160/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| ? | NC_000913 | 910910 = | 1956 (51.170) | coding (140/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding | |||||
| * | ? | NC_000913 | = 910896 | 1956 (48.320) | 22 (0.580) | 15/240 | 1.5 | 1.1% | coding (154/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| ? | NC_000913 | = 910902 | 1956 (51.170) | coding (148/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding | |||||
| * | ? | NC_000913 | 909159 = | 2128 (52.570) | 14 (0.370) | 13/240 | 1.8 | 0.71% | coding (136/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent |
| ? | NC_000913 | 909184 = | 1899 (49.670) | coding (111/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 908102 | 2212 (54.650) | 17 (0.440) | 13/242 | 1.9 | 0.79% | coding (181/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | NC_000913 | = 908110 | 2137 (55.430) | coding (173/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | NC_000913 | = 906956 | 2260 (55.830) | 15 (0.390) | 12/244 | 2.1 | 0.68% | coding (1327/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | NC_000913 | = 906965 | 2232 (57.420) | coding (1318/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | NC_000913 | = 906467 | 2322 (57.360) | 10 (0.260) | 9/244 | 2.7 | 0.45% | coding (287/1014 nt) | ybjS | putative NAD(P)H‑dependent oxidoreductase |
| ? | NC_000913 | = 906499 | 2180 (56.080) | coding (255/1014 nt) | ybjS | putative NAD(P)H‑dependent oxidoreductase | |||||
| * | ? | NC_000913 | 909189 = | 1911 (47.210) | 7 (0.180) | 7/246 | 3.3 | 0.36% | coding (106/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent |
| ? | NC_000913 | 909225 = | 2022 (51.590) | coding (70/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent | |||||
| * | ? | NC_000913 | 4124467 = | 47 (1.160) | 6 (0.160) | 6/242 | 3.6 | 12.5% | intergenic (‑11/+145) | cytR/priA | Anti‑activator for CytR‑CRP nucleoside utilization regulon/Primosome factor n' (replication factor Y) |
| ? | NC_000913 | 4124485 = | 39 (1.010) | intergenic (‑29/+127) | cytR/priA | Anti‑activator for CytR‑CRP nucleoside utilization regulon/Primosome factor n' (replication factor Y) | |||||
| * | ? | NC_000913 | 2700550 = | 38 (0.940) | 5 (0.150) | 5/216 | 3.6 | 13.5% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | 2700601 = | 32 (0.930) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | = 909154 | 2111 (52.150) | 6 (0.150) | 6/244 | 3.6 | 0.31% | coding (141/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent |
| ? | NC_000913 | = 909188 | 1791 (46.070) | coding (107/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent | |||||