mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 36.4% | 18.5 / 18.2 | 22 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,596,873 | 0 | C | . | 26.1% | 54.1 / 17.7 | 23 | intergenic (‑136/+32) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| * | NC_000913 | 2,596,878 | 1 | . | G | 24.0% | 48.7 / 25.1 | 25 | intergenic (‑141/+27) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| Marginal new junction evidence (lowest skew 10 of 46 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 20 (0.540) | 6 (0.180) | 6/252 | 3.3 | 17.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 39 (1.180) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1889904 = | 25 (0.670) | 6 (0.170) | 6/262 | 3.5 | 22.2% | intergenic (‑158/+47) | fadD/yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated |
| ? | NC_000913 | 1889931 = | 19 (0.550) | intergenic (‑185/+20) | fadD/yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated | |||||
| * | ? | NC_000913 | 4429566 = | 44 (1.180) | 5 (0.140) | 5/278 | 4.0 | 10.4% | intergenic (+11/‑298) | fklB/cycA | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/D‑alanine/D‑serine/glycine transporter |
| ? | NC_000913 | 4429594 = | 43 (1.180) | intergenic (+39/‑270) | fklB/cycA | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | NC_000913 | = 53968 | 23 (0.620) | 7 (0.190) | 5/276 | 4.0 | 23.2% | coding (735/1287 nt) | surA | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
| ? | NC_000913 | = 53983 | 24 (0.660) | coding (720/1287 nt) | surA | peptidyl‑prolyl cis‑trans isomerase (PPIase) | |||||
| * | ? | NC_000913 | = 3792764 | 49 (1.310) | 4 (0.120) | 4/262 | 4.2 | 8.0% | intergenic (‑213/+62) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| ? | NC_000913 | = 3792768 | 47 (1.370) | intergenic (‑217/+58) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown | |||||
| * | ? | NC_000913 | 3429875 = | 41 (1.100) | 5 (0.150) | 4/262 | 4.2 | 11.0% | coding (149/258 nt) | yrdB | DUF1488 family protein |
| ? | NC_000913 | 3429908 = | 43 (1.250) | coding (116/258 nt) | yrdB | DUF1488 family protein | |||||
| * | ? | NC_000913 | 3360632 = | 50 (1.340) | 4 (0.120) | 4/262 | 4.2 | 8.0% | intergenic (+16/‑544) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| ? | NC_000913 | 3360657 = | NA (NA) | intergenic (+41/‑519) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein | |||||
| * | ? | NC_000913 | 4204568 = | 36 (0.970) | 4 (0.110) | 4/266 | 4.3 | 10.7% | coding (1249/1326 nt) | zraR | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein |
| ? | NC_000913 | 4204598 = | 33 (0.950) | coding (1279/1326 nt) | zraR | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein | |||||
| * | ? | NC_000913 | = 3977430 | 48 (1.290) | 4 (0.110) | 4/270 | 4.3 | 8.6% | coding (1153/1251 nt) | wzxE | O‑antigen translocase |
| ? | NC_000913 | = 3977447 | 39 (1.100) | coding (1170/1251 nt) | wzxE | O‑antigen translocase | |||||
| * | ? | NC_000913 | 3690291 = | 58 (1.550) | 4 (0.110) | 4/266 | 4.3 | 6.9% | coding (2317/2340 nt) | bcsB | regulator of cellulose synthase, cyclic di‑GMP binding |
| ? | NC_000913 | = 3690287 | 54 (1.550) | coding (2321/2340 nt) | bcsB | regulator of cellulose synthase, cyclic di‑GMP binding | |||||