New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3194740	15 (0.490)	28 (0.920)	26/282	0.3	65.3%	noncoding (126/143 nt)	sibD	sRNA antisense regulator of toxic IbsD protein
	?	NC_000913	3720633 =	NA (NA)					noncoding (1/1443 nt)	IS150	repeat region

AAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTAACAGCCAATCAGAGGGGGGAGAAATCCTCCCTCACCCTTGTTCCTTTACTTTAGGTTGAA  >  NC_000913/3194592‑3194884                                                                                                                                                     |                                                                                                                                                 aaGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAA                                                                                                                                                  >  6:22052‑M1/1‑149 (MQ=255) aaGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAA                                                                                                                                                  <  3:25802‑M1/149‑1 (MQ=255)      cAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAgggg                                                                                                                                              <  4:6884/148‑1 (MQ=255)       aaaTGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAATCGGGAAAGCCCCTCCCGAAGAAGGGGGc                                                                                                                                            <  5:95917/149‑1 (MQ=255)          tGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGGCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgca                                                                                                                                         <  1:64341‑M1/149‑10 (MQ=255)           gATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcac                                                                                                                                        >  2:108477‑M1/1‑139 (MQ=255)                       gcagcaTTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttg                                                                                                                             <  8:6909‑M1/148‑22 (MQ=255)                            aTTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTat                                                                                                                       <  6:3612/149‑1 (MQ=255)                                 gCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaat                                                                                                                  >  1:45756‑M1/1‑117 (MQ=255)                                   gTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatg                                                                                                                 >  5:31334‑M1/1‑115 (MQ=255)                                               ggAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCATCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaa                                                                                                    <  7:42392‑M1/149‑47 (MQ=255)                                                   ggCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGa                                                                                                <  6:30451/149‑1 (MQ=255)                                                      aaaaCTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtc                                                                                              >  4:88634‑M1/1‑96 (MQ=255)                                                               tCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCATGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaa                                                                                    <  3:88634‑M1/149‑63 (MQ=255)                                                                 agagAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaat                                                                                   <  8:5542‑M1/148‑64 (MQ=255)                                                                   agaAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGTAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaat                                                                                                   <  2:29526‑M1/130‑48 (MQ=255)                                                                   agaAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGTAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaat                                                                                                   >  1:29526‑M1/1‑83 (MQ=255)                                                                     aaaGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGt                                                                                >  7:93607/1‑147 (MQ=255)                                                                     aaaGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGt                                                                                >  8:73040/1‑147 (MQ=255)                                                                      aaGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctt                                                                             <  2:8156‑M1/149‑70 (MQ=255)                                                                       aGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttt                                                                            <  2:45756‑M1/149‑71 (MQ=255)                                                                       aGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttt                                                                            <  1:78701‑M1/149‑71 (MQ=255)                                                                               gTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagc                                                                    <  1:108477‑M1/149‑79 (MQ=255)                                                                                  gggTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcc                                                                 <  6:31334‑M1/149‑82 (MQ=255)                                                                                     tCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcctt                                                               >  5:8472‑M1/1‑65 (MQ=255)                                                                                         gcgcTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTAACa                                                           <  8:93607/148‑1 (MQ=255)                                                                                          cgcTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTAACAGc                                                         <  7:73040/149‑1 (MQ=255)                                                                                               atcaACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaa                                                    >  7:18101‑M1/1‑55 (MQ=255)                                                                                               atcaACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgt                                                       <  1:21305‑M1/146‑92 (MQ=255)                                                                                               atcaACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgt                                                       >  2:21305‑M1/1‑55 (MQ=255)                                                                                                  aacaaTCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTAACAGCCAATCaga                                                 <  5:70157/149‑1 (MQ=255)                                                                                                          gggAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttca                                         <  1:50308‑M1/149‑106 (MQ=255)                                                                                                           ggAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttca                                         >  4:40861‑M1/1‑43 (MQ=255)                                                                                                                   cagGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgat                                 >  4:50359‑M1/1‑35 (MQ=255)                                                                                                                           tGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTaa                                                             <  4:67653/112‑1 (MQ=255)                                                                                                                           tGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTaa                                                             >  3:67653/1‑112 (MQ=255)                                                                                                                               aCGGGAAAGCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacagga                    >  7:67121‑M1/1‑23 (MQ=255)                                                                                                                                 gggAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTAACAGCCAATCAGAGGGGGGAGAAATCCTCCCTCACCCTTGTTcc                  >  5:59016/1‑149 (MQ=255)                                                                                                                                       gCCCCTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcg            <  5:22052‑M1/149‑135 (MQ=255)                                                                                                                                          ccTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctc             >  4:87620‑M1/1‑12 (MQ=255)                                                                                                                                          ccTCCCGAAGAAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctc             <  3:87620‑M1/145‑134 (MQ=255)                                                                                                                                            tCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTaa                                                             >  2:41602/1‑95 (MQ=255)                                                                                                                                            tCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTaa                                                             <  1:41602/95‑1 (MQ=255)                                                                                                                                              ccGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTAACAGCCAATCAGAGGGGGGAGAAATCCTCCCTCACCCTTGTTCCTTTACTTTAGGtt     >  6:104187/1‑149 (MQ=255)                                                                                                                                                 aagaatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttg  <  8:18101‑M1/149‑145 (MQ=255)                                                                                                                                                     |                                                                                                                                                 AAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGCTTATTAACAGCCAATCAGAGGGGGGAGAAATCCTCCCTCACCCTTGTTCCTTTACTTTAGGTTGAA  >  NC_000913/3194592‑3194884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.