| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3194740 | 15 (0.490) | 28 (0.920) | 26/282 | 0.3 | 65.3% | noncoding (126/143 nt) | sibD | sRNA antisense regulator of toxic IbsD protein |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
CTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT > NC_000913/3720493‑3720778 | tgatcaggttgttgcagcattttgcgtgacggctcggggaaggcaaaactgcatcagagaaagcattgcgtgggggctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCa < 1:64341‑M2/9‑1 (MQ=255) gatcaggttgttgcagcattttgcgtgacggctcggggaaggcaaaactgcatcagagaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCAc > 2:108477‑M2/140‑149 (MQ=255) gcagcattttgcgtgacggctcggggaaggcaaaactgcatcagagaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTttgttg < 8:6909‑M2/21‑1 (MQ=255) agaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGAt > 2:138852‑M2/120‑149 (MQ=255) aactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGa > 1:107106‑M2/117‑148 (MQ=255) aactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGa > 5:56877‑M2/117‑148 (MQ=255) gcgtgacggctcggggaaggcaaaactgcatcagagaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:45756‑M2/118‑149 (MQ=255) gtgacggctcggggaaggcaaaactgcatcagagaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATg > 5:31334‑M2/116‑148 (MQ=255) gcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 2:120932‑M2/40‑1 (MQ=255) cgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc < 2:63932‑M2/43‑1 (MQ=255) ggaaggcaaaactgcatcagagaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccatcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 7:42392‑M2/46‑1 (MQ=255) aaaactgcatcagagaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTc > 4:88634‑M2/97‑148 (MQ=255) agcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGc < 2:13790‑M2/60‑1 (MQ=255) gggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaa < 2:122813‑M2/63‑1 (MQ=255) tcagagaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcatggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa < 3:88634‑M2/62‑1 (MQ=255) agagaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAt < 8:5542‑M2/63‑1 (MQ=255) agaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagtagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 2:29526‑M2/47‑1 (MQ=255) agaaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagtagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat > 1:29526‑M2/84‑130 (MQ=255) aagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt < 2:8156‑M2/69‑1 (MQ=255) agcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCttt < 2:45756‑M2/70‑1 (MQ=255) agcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCttt < 1:78701‑M2/70‑1 (MQ=255) ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg > 8:44135‑M2/70‑149 (MQ=255) ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGACCCTAATATGTCAACGCCAAAATACCCTTTTGAAAAg > 7:49820‑M2/70‑149 (MQ=255) gtggggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc < 1:108477‑M2/78‑1 (MQ=255) gggtctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc < 6:31334‑M2/81‑1 (MQ=255) gaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGTCATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc > 8:57894‑M2/66‑149 (MQ=255) tctggcgctcatcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCtt > 5:8472‑M2/66‑148 (MQ=255) caggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGaa < 6:56877‑M2/89‑1 (MQ=255) atcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt < 1:21305‑M2/91‑1 (MQ=255) atcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt > 2:21305‑M2/56‑146 (MQ=255) atcaacaatcggggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGaa > 7:18101‑M2/56‑149 (MQ=255) agtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGaa < 8:49820‑M2/97‑1 (MQ=255) tatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt > 5:21404‑M2/51‑148 (MQ=255) tatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATc < 2:107106‑M2/99‑1 (MQ=255) atcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc < 1:78217‑M2/81‑1 (MQ=255) atcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc > 2:78217‑M2/50‑130 (MQ=255) tcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac > 7:105079‑M2/49‑149 (MQ=255) tcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTGGAAAAGCGCCTTGAAGTCGTGAATCac > 5:124505‑M2/49‑149 (MQ=255) aaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCactact > 3:111926‑M2/45‑149 (MQ=255) gggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTca < 1:50308‑M2/105‑1 (MQ=255) ggagtcagcagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTca > 4:40861‑M2/44‑148 (MQ=255) cagggggctgaaacgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgat > 4:50359‑M2/36‑148 (MQ=255) gaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTgatgat > 3:53190‑M2/31‑149 (MQ=255) ctgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGtt < 7:44135‑M2/123‑1 (MQ=255) tgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTa > 2:88175‑M2/26‑149 (MQ=255) caggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAg > 7:83662‑M2/22‑148 (MQ=255) acgggaaagcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGa > 7:67121‑M2/24‑149 (MQ=255) ggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGat > 5:121160‑M2/20‑149 (MQ=255) gcccctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCg < 5:22052‑M2/134‑1 (MQ=255) gtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCa > 5:10901‑M2/10‑149 (MQ=255) cctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAtctc > 4:87620‑M2/13‑145 (MQ=255) cctcccgaagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAtctc < 3:87620‑M2/133‑1 (MQ=255) tcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCAc > 6:108770‑M2/9‑149 (MQ=255) gttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGtt > 1:117936‑M2/6‑149 (MQ=255) aagaaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTg < 8:18101‑M2/144‑1 (MQ=255) aGTATGTACTGCACCCATTTTGTTGGACGATGAAAGGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGGTACAGGATCATCTCGGCACGTTTTg < 6:124505‑M2/147‑1 (MQ=255) gTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGgt < 1:138852/149‑1 (MQ=255) | CTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT > NC_000913/3720493‑3720778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |