Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,625,589 Δ95,041 bp yhhJ[mokA] 82 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3625589 3720629 95041 28 [0] [0] 29 yhhJ–[mokA] yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 36255880 (0.000)27 (0.880) 24/282 0.3 100% intergenic (+74/+91) yhhI/yhhJ putative transposase/putative ABC transporter permease
?NC_000913 3720630 = NA (NA)pseudogene (3/185 nt) mokA pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS

AGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC  >  NC_000913/3625470‑3625735
                                                                                                                      |                                                                                                                                                   
aGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgat                                                                                                                       >  2:138852‑M1/1‑119 (MQ=255)
   aaCTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatga                                                                                                                     >  5:56877‑M1/1‑116 (MQ=255)
   aaCTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatga                                                                                                                     >  1:107106‑M1/1‑116 (MQ=255)
            gCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaat                                                                                                             <  2:120932‑M1/147‑41 (MQ=255)
             cGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagc                                                                                                          <  2:63932‑M1/149‑44 (MQ=255)
                              aGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagc                                                                                         <  2:13790‑M1/149‑61 (MQ=255)
                                 gggCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaa                                                                                      <  2:122813‑M1/149‑64 (MQ=255)
                                                  cccTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaag                                                                     >  8:44135‑M1/1‑69 (MQ=255)
                                                  cccTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagaccctaatatgtcaacgccaaaatacccttttgaaaag                                                                     >  7:49820‑M1/1‑69 (MQ=255)
                                                      gAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatgtcatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcc                                                                 >  8:57894‑M1/1‑65 (MQ=255)
                                                           cAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaa                                                            <  6:56877‑M1/149‑90 (MQ=255)
                                                                   aGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaa                                                    <  8:49820‑M1/149‑98 (MQ=255)
                                                                     tATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatc                                                  <  2:107106‑M1/149‑100 (MQ=255)
                                                                     tATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaat                                                   >  5:21404‑M1/1‑50 (MQ=255)
                                                                      aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagc                                                                    >  2:78217‑M1/1‑49 (MQ=255)
                                                                      aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagc                                                                    <  1:78217‑M1/130‑82 (MQ=255)
                                                                       tCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcac                                                >  7:105079‑M1/1‑48 (MQ=255)
                                                                       tCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttggaaaagcgccttgaagtcgtgaatcac                                                >  5:124505‑M1/1‑48 (MQ=255)
                                                                           aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactact                                            >  3:111926‑M1/1‑44 (MQ=255)
                                                                                         gAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgat                              >  3:53190‑M1/1‑30 (MQ=255)
                                                                                             cTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggtt                          <  7:44135‑M1/149‑124 (MQ=255)
                                                                                              tGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggtta                         >  2:88175‑M1/1‑25 (MQ=255)
                                                                                                  cAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacag                      >  7:83662‑M1/1‑21 (MQ=255)
                                                                                                    ggTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggat                   >  5:121160‑M1/1‑19 (MQ=255)
                                                                                                              gTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggca         >  5:10901‑M1/1‑9 (MQ=255)
                                                                                                               tcagttcagtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcac        >  6:108770‑M1/1‑8 (MQ=255)
                                                                                                                  gttcagtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgtt     >  1:117936‑M1/1‑5 (MQ=255)
                                                                                                                      agtatgtactgcacccattttgttggacgatgaaagggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatgggtacaggatcatctcggcacgttttg  <  6:124505‑M1/148‑148 (MQ=255)
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AGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC  >  NC_000913/3625470‑3625735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.