Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,625,589 Δ95,041 bp yhhJ[mokA] 82 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3625589 3720629 95041 28 [0] [0] 29 yhhJ–[mokA] yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 36255880 (0.000)27 (0.880) 24/282 0.3 100% intergenic (+74/+91) yhhI/yhhJ putative transposase/putative ABC transporter permease
?NC_000913 3720630 = NA (NA)pseudogene (3/185 nt) mokA pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS

TTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT  >  NC_000913/3720511‑3720778
                                                                                                                       |                                                                                                                                                    
agaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGAt                                                                                                                         >  2:138852‑M2/120‑149 (MQ=255)
   aactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGa                                                                                                                       >  5:56877‑M2/117‑148 (MQ=255)
   aactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGa                                                                                                                       >  1:107106‑M2/117‑148 (MQ=255)
            gcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt                                                                                                               <  2:120932‑M2/40‑1 (MQ=255)
             cgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc                                                                                                            <  2:63932‑M2/43‑1 (MQ=255)
                              agcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGc                                                                                           <  2:13790‑M2/60‑1 (MQ=255)
                                 gggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaa                                                                                        <  2:122813‑M2/63‑1 (MQ=255)
                                                  ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg                                                                       >  8:44135‑M2/70‑149 (MQ=255)
                                                  ccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGACCCTAATATGTCAACGCCAAAATACCCTTTTGAAAAg                                                                       >  7:49820‑M2/70‑149 (MQ=255)
                                                      gaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGTCATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGcc                                                                   >  8:57894‑M2/66‑149 (MQ=255)
                                                           caggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGaa                                                              <  6:56877‑M2/89‑1 (MQ=255)
                                                                   agtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGaa                                                      <  8:49820‑M2/97‑1 (MQ=255)
                                                                     tatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt                                                     >  5:21404‑M2/51‑148 (MQ=255)
                                                                     tatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATc                                                    <  2:107106‑M2/99‑1 (MQ=255)
                                                                      atcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc                                                                      >  2:78217‑M2/50‑130 (MQ=255)
                                                                      atcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc                                                                      <  1:78217‑M2/81‑1 (MQ=255)
                                                                       tcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac                                                  >  7:105079‑M2/49‑149 (MQ=255)
                                                                       tcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTGGAAAAGCGCCTTGAAGTCGTGAATCac                                                  >  5:124505‑M2/49‑149 (MQ=255)
                                                                           aaagccggttaactgaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCactact                                              >  3:111926‑M2/45‑149 (MQ=255)
                                                                                         gaaactgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTgatgat                                >  3:53190‑M2/31‑149 (MQ=255)
                                                                                             ctgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGtt                            <  7:44135‑M2/123‑1 (MQ=255)
                                                                                              tgtccaggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTa                           >  2:88175‑M2/26‑149 (MQ=255)
                                                                                                  caggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAg                        >  7:83662‑M2/22‑148 (MQ=255)
                                                                                                    ggttttgggggtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGat                     >  5:121160‑M2/20‑149 (MQ=255)
                                                                                                              gtcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCa           >  5:10901‑M2/10‑149 (MQ=255)
                                                                                                               tcagttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCAc          >  6:108770‑M2/9‑149 (MQ=255)
                                                                                                                  gttcaGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGtt       >  1:117936‑M2/6‑149 (MQ=255)
                                                                                                                      aGTATGTACTGCACCCATTTTGTTGGACGATGAAAGGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGGTACAGGATCATCTCGGCACGTTTTg    <  6:124505‑M2/147‑1 (MQ=255)
                                                                                                                       gTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGgt  <  1:138852/149‑1 (MQ=255)
                                                                                                                       |                                                                                                                                                    
TTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT  >  NC_000913/3720511‑3720778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.