New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4008241181 (2.300)3 (0.040) 3/240 NT 1.7% coding (485/621 nt) rhtC threonine efflux pump
?NC_000913 = 4008257 183 (2.440)coding (501/621 nt) rhtC threonine efflux pump
Rejected: Frequency below/above cutoff threshold.

Only 100 of 236 total aligned reads displayed.

GCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGT  >  NC_000913/4008094‑4008389
                                                                                                                                                   |                                                                                                                                                    
gcAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGC                                                                                                                                                      <  7:386049‑M1/148‑1 (MQ=255)
   gTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTgg                                                                                                                                                  <  4:172346/149‑1 (MQ=255)
         tGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTAcc                                                                                                                                            >  4:147820/1‑149 (MQ=255)
         tGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTAcc                                                                                                                                            >  5:40366/1‑149 (MQ=255)
          gAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTAcc                                                                                                                                            >  6:206842/1‑148 (MQ=255)
          gAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACcg                                                                                                                                           >  8:567/1‑149 (MQ=255)
           aaaGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTAcc                                                                                                                                            <  5:163993/147‑1 (MQ=255)
           aaaGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTAcc                                                                                                                                            <  1:74893/147‑1 (MQ=255)
           aaaGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCGACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACcgt                                                                                                                                          >  8:323295/1‑149 (MQ=255)
                tttACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTg                                                                                                                                     <  6:59825‑M2/149‑2 (MQ=255)
                       aCCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCt                                                                                                                              >  5:211355/1‑149 (MQ=255)
                       aCCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTGCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCGGGC                                                                                                                                                      <  2:324167‑M1/125‑1 (MQ=255)
                           aTCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGttt                                                                                                                          <  6:326296/149‑1 (MQ=255)
                              tcGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGATTACCGTCGTTgcc                                                                                                                                   <  2:126054‑M2/137‑4 (MQ=255)
                               cGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGccc                                                                                                                      >  3:252336/1‑149 (MQ=255)
                                gCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGTACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGcc                                                                                                                       <  3:13422/147‑1 (MQ=255)
                                gCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCt                                                                                                                     >  1:131947/1‑149 (MQ=255)
                                        gAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTGCCGTCGTTGCCAGCCTGt                                                                                                                            >  7:98933/1‑134 (MQ=255)
                                         aaaGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTgcca                                                                                                                                  >  5:354155‑M2/1‑123 (MQ=255)
                                         aaaGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAAt                                                                                                            <  7:358285/149‑1 (MQ=255)
                                           aGCGTTTATCTTCTTTGGCTGGGTGTTCTGATTGTTTGTCGGTGATATCGTTGGCACTAGCGCGCGCTGTGTCATTTTTGCGCTGATCATTGTCGAAACGCTGGGGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATgc                                                                                                          <  5:295339/149‑1 (MQ=255)
                                           aGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATgc                                                                                                          <  7:567/149‑1 (MQ=255)
                                           aGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATgc                                                                                                          <  5:339511/149‑1 (MQ=255)
                                              gATTATCAACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGcc                                                                                                       <  7:323295/149‑1 (MQ=255)
                                                     tACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTa                                                                                                >  4:299429/1‑149 (MQ=255)
                                                     tACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTa                                                                                                >  8:120514/1‑149 (MQ=255)
                                                      aCTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTAt                                                                                               >  2:64707/1‑149 (MQ=255)
                                                       cTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACTTTGGCACTACCGCGCGCTGGGGCATTTTTGAGCTGATCATTGTCGAAACGCTGGCGTGGTTTTCCGTCGTTCCCAGCCTGTTTGCCCTGCCGCATATGCGCCGTGGTTAt                                                                                               >  1:254575/1‑148 (MQ=255)
                                                       cTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTAt                                                                                               >  1:295790/1‑148 (MQ=255)
                                                             cTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTc                                                                                        >  5:182283/1‑149 (MQ=255)
                                                              tCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCg                                                                                                      <  3:37383/134‑1 (MQ=255)
                                                                       tcATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTg                                                                              >  2:208732/1‑149 (MQ=255)
                                                                       tcATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTg                                                                              >  3:317181/1‑149 (MQ=255)
                                                                       tcATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATAGTCGAAACGCTGGCGTGGTTTACCGTCGTTTCCACCCTCTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTCGCGAAGTg                                                                              >  4:41398/1‑149 (MQ=255)
                                                                        cATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTg                                                                              >  2:103943/1‑148 (MQ=255)
                                                                         aTTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTgcca                                                                                                                                  >  5:213825‑M2/1‑91 (MQ=255)
                                                                         aTTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGa                                                                            <  3:120075/149‑1 (MQ=255)
                                                                         aTTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGa                                                                            >  6:27315/1‑149 (MQ=255)
                                                                             gttgtCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCAGTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTAACGTCGTTGCCAGCCTGTTTGCCATGCCGCAAATGCGCCGTGGTAATCACCGTCTGGCGAAGTGGAtt                                                                          >  2:79762/2‑147 (MQ=255)
                                                                               tgtCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGAt                                                                       <  7:120514/148‑1 (MQ=255)
                                                                                 tCGGTGATAACTTTGGCACTACCGCGCGCTGGTGAATTTTGGCGCTGATCATTGGCGAAACGCTGGCGTGGTTTACCGTCTTTGCCAGCCTGTTTGCCCGGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGt                                                                    <  6:95005/149‑1 (MQ=255)
                                                                                    gTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGtttt                                                                 >  2:188123/1‑149 (MQ=255)
                                                                                    gTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGtttt                                                                 <  6:144608/149‑1 (MQ=255)
                                                                                         aaCGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCgg                                                            >  1:253014/1‑149 (MQ=255)
                                                                                         aaCGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCgg                                                            >  6:358654/1‑149 (MQ=255)
                                                                                           cGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCgggg                                                          <  7:13633/149‑1 (MQ=255)
                                                                                               ggCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGt                                                       >  3:162211/1‑148 (MQ=255)
                                                                                                gCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTa                                                     <  8:141725/149‑1 (MQ=255)
                                                                                                gCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTa                                                     <  1:64707/149‑1 (MQ=255)
                                                                                                  aCTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTAtt                                                   >  1:258470/1‑149 (MQ=255)
                                                                                                   cTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCAGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTAttt                                                  <  7:312157/149‑1 (MQ=255)
                                                                                                    tACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGa                                                                        >  2:334888/1‑126 (MQ=255)
                                                                                                    tACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGa                                                                        <  1:334888/126‑1 (MQ=255)
                                                                                                      ccGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGcc                                               <  6:76919/149‑1 (MQ=255)
                                                                                                      ccGCGCGCTGCGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCACAGTCTGGCGAAGTGGATTGATGGTTTTGACGGGGCGTTATTTGcc                                               >  2:87923/1‑149 (MQ=255)
                                                                                                          gcgcTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGc                                                <  5:82960/144‑1 (MQ=255)
                                                                                                             cTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTg                                        <  4:324378/149‑1 (MQ=255)
                                                                                                              tGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTgg                                       >  8:181273/1‑149 (MQ=255)
                                                                                                               ggggCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGc                                      <  6:40366/149‑1 (MQ=255)
                                                                                                                gggCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGAGGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGca                                     <  2:253014/149‑1 (MQ=255)
                                                                                                                gggCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGGTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTgg                                       <  5:27315/147‑1 (MQ=255)
                                                                                                                gggCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGGGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGGGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGca                                     <  3:224532/149‑1 (MQ=255)
                                                                                                                 ggCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGcat                                    <  7:181273/149‑1 (MQ=255)
                                                                                                                 ggCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACAGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGcat                                    >  6:113509/1‑149 (MQ=255)
                                                                                                                  gCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGcatt                                   >  7:318722/1‑149 (MQ=255)
                                                                                                                    aTTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGccc                                                                                                                      >  2:255400/1‑64 (MQ=255)
                                                                                                                       tttGCGCTGATCATTGTCGAATCGCTTGCGTGGTTTACCGGCGTTGCGAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTTGATTGATGGGTTTGCCGGGGCGTTATTTGCCTGATTTGGcattcatt                               <  5:107010/148‑1 (MQ=255)
                                                                                                                           cgcTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGat                           <  8:380391/148‑1 (MQ=255)
                                                                                                                            gcTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGatta                         <  4:126600/149‑1 (MQ=255)
                                                                                                                              tGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTg                                        >  5:7317/1‑132 (MQ=255)
                                                                                                                              tGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGcat                                    <  1:19926/136‑1 (MQ=255)
                                                                                                                              tGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGattatt                       >  4:98430/1‑149 (MQ=255)
                                                                                                                               gATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTAttt                      >  7:278315/1‑149 (MQ=255)
                                                                                                                                aTCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCGTGTTTGCCCTGCCGCAAATGCGCCGTgg                                                                                                   >  8:272996/1‑71 (MQ=255)
                                                                                                                                aTCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGattatt                       <  4:233995/147‑1 (MQ=255)
                                                                                                                                aTCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGattatt                       <  3:145130/147‑1 (MQ=255)
                                                                                                                                aTCATTGTCGAAACGCTGGCGTGGGTTACCGTCGGTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCAGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGattatt                       <  1:87923/147‑1 (MQ=255)
                                                                                                                                 tCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTcg                    >  3:205722/1‑149 (MQ=255)
                                                                                                                                   aTTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTcgcg                  >  7:144947/1‑149 (MQ=255)
                                                                                                                                   aTTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTcgcg                  <  6:182283/149‑1 (MQ=255)
                                                                                                                                    ttGTCGAAACGCTGGCGTGGTTTACCGTCGTTgccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaagtagataatcgctttcggattagc                  <  2:220646‑M2/148‑117 (MQ=255)
                                                                                                                                       tCGAATCGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCAGTGGTTATCAACGTCTGGCGAAGTGGTTTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTTGCATTCATTTGATTATTTCGCGGTGa              <  2:196798/149‑1 (MQ=255)
                                                                                                                                         gAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGcattc                                  <  4:140530/127‑1 (MQ=255)
                                                                                                                                         gAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGca                                     <  6:249592/124‑1 (MQ=255)
                                                                                                                                         gAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGAt             <  3:5626/148‑1 (MQ=255)
                                                                                                                                         gAAACGCTGGCGTGGTGTACCGTCGTTGCCAGCCCGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGGGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGAt             <  4:110216/148‑1 (MQ=255)
                                                                                                                                           aaCGCTGGCGTGGTTTACCGTCGTTgccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaagt                                        <  2:220520‑M2/119‑95 (MQ=255)
                                                                                                                                           aaCGCTGGCGTGGTTTACCGTCGTTgccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaagt                                        >  1:220520‑M2/1‑25 (MQ=255)
                                                                                                                                             cGCTGGCGTGGTTTACCGTCGTTGCCTGCCTGTTTGCACTGCCGCAAATGCGTCGTGGTTATCTACGTCTGGCGATGTGGATTTATGGTTTTGGCGGGGCGTTATTTTCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCa         <  1:208732/148‑1 (MQ=255)
                                                                                                                                              gCTGGCaacgacggtaaaccacgccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaagtagataatcgctttcggattagcgagattggtca       <  4:22662‑M1/149‑144 (MQ=255)
                                                                                                                                               cTGGGaacgacggtaaacgacgccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaagtagataatcgctttcggattagcgagattggtca       <  6:107010‑M1/148‑144 (MQ=255)
                                                                                                                                               cTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGAc      <  8:318722/149‑1 (MQ=255)
                                                                                                                                                tGGCaacgacggtaaaccacgccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaa                                          <  8:86243‑M1/112‑109 (MQ=255)
                                                                                                                                                tGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGAcg     >  8:298825/1‑149 (MQ=255)
                                                                                                                                                tGGCGTGGTGTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGattatt                       <  6:213278/131‑1 (MQ=255)
                                                                                                                                                 ggCaacgacggtaaaccacgccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaagtagataatcgctttcggattagcga                >  1:126054‑M1/1‑3 (MQ=255)
                                                                                                                                                  gCaacgacggtaaaccacaccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaagtagataatcgc                              <  2:190702‑M1/122‑121 (MQ=255)
                                                                                                                                                  gCaacgacggtaaaccacaccagcgtttcgacaatgatcagcgcaaaaatgccccagcgcgcggtagtgccaacgttatcaccgacaaacaatgagaacaccgagccaaagtagataatcgc                              >  1:190702‑M1/1‑2 (MQ=255)
                                                                                                                                                  gCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTcgc                   <  2:346653/133‑1 (MQ=255)
                                                                                                                                                  gCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTcgc                   >  1:346653/1‑133 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCGTGGTTTACCGTCGTTGCCAGCCTGTTTGCCCTGCCGCAAATGCGCCGTGGTTATCAACGTCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGT  >  NC_000913/4008094‑4008389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.