New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1522008 =	38 (0.700)	4 (0.080)	4/250	NT	10.9%	coding (1058/2103 nt)	yncD	putative iron outer membrane transporter
	?	NC_000913	1522036 =	29 (0.560)					coding (1030/2103 nt)	yncD	putative iron outer membrane transporter

ATTGCGTTCGTCGCGACGCAACTCACCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGTTTCTCGCTCTCCGGCATACATCATCACACTCATA  >  NC_000913/1521890‑1522184                                                                                                                                                   |                                                                                                                                                     aTTGCGTTCGTCGCGACGCAACTCACCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTcaccac                                                                                                                                                    >  8:131930/1‑149 (MQ=255)     cGTTCGTCGCGACGCAACTCACCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGgt                                                                                                                                                 <  5:166574/148‑1 (MQ=255)     cGTTCGTCGCGACGCAACTCACCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATCTTTTCGTAGTTCAGGCCGGTAGTGCACGTGACCGGAACGCCCAGTTCACCACGgtg                                                                                                                                                >  8:229180/1‑149 (MQ=255)                 cGCAACTCACCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCt                                                                                                                                    <  7:120574/149‑1 (MQ=255)                  gCAACTCACCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTg                                                                                                                                   >  5:235888/1‑149 (MQ=255)                    aaCTCACCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTc                                                                                                                                 >  7:213920/1‑149 (MQ=255)                         aCCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGACCGTGGCCGGAACGCCCAGTTCAGCCCGGTATGTCCAGCGGCGGTCTAGTc                                                                                                                            >  2:231608/1‑149 (MQ=255)                         aCCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTAtt                                                                                                                             <  5:147081/148‑1 (MQ=255)                           cTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTccc                                                                                                                          >  3:51296/1‑149 (MQ=255)                            tttttGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGgt                                                                                                                                                 >  6:104658/1‑125 (MQ=255)                            tttttGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGgt                                                                                                                                                 <  5:104658/125‑1 (MQ=255)                            atggcaccacaacttaacccgtcacatgcgggcggcgtgattaccctgcaacgccattaccagggaatagacagccgctggacacaccgtgGTGAACGTGACCGGAACGCCCAGTTCACCACGgtgtgt                                                                                                                                             <  8:162005‑M1/38‑1 (MQ=255)                            atggcaccacaacttaacccgtcacatgcgggcggcgtgattaccctgcaacgccattaccagggaatagacagccgctggacacaccgtgGTGAACGTGACCGGAACGCCCAGTTCACCACGgtgtgt                                                                                                                                             >  7:162005‑M1/92‑129 (MQ=255)                              tttGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCt                                                                                                                         <  7:131930/147‑1 (MQ=255)                                  cccGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAAt                                                                                                                   >  6:5251/1‑149 (MQ=255)                                         ttaacccgtcacatgcgggcggcgtgattaccctgcaacgccattaccagggaatagacagccgctggacacaccgtgGTGAACGTGACCGGAACGCCCAGTTcaccac                                                                                                                                                    <  4:133790‑M1/31‑1 (MQ=255)                                         ttaacccgtcacatgcgggcggcgtgattaccctgcaacgccattaccagggaatagacagccgctggacacaccgtgGTGAACGTGACCGGAACGCCCAGTTcaccac                                                                                                                                                    >  3:133790‑M1/79‑109 (MQ=255)                                         tCCGGCATGCCGCTAATCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTATCGTAGTTCAGGCCGGTAGTGAACCTGACCGGAACGCCCAGTTCACAACGGTGTGTCCAGCTGCTGTCTATTCCCTGGTAATGGCGTTg                                                                                                            >  5:10277/1‑149 (MQ=255)                                            ggCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAg                                                                                                         <  6:235888/149‑1 (MQ=255)                                             gCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAgg                                                                                                        <  7:249132/149‑1 (MQ=255)                                                    gCTACTCAGGCGGAAGTTATTGTCGGACTTGCGGTTTTGACTCATGTTTTCGTAGTTCAGGCCTGTAGTGAACGTGACCGGAACGCCCAGTTCTCCACGGTGTGTCCAGGGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCa                                                                                                 <  6:10277/149‑1 (MQ=255)                                                     cTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCAc                                                                                                <  5:5251/149‑1 (MQ=255)                                                                  aGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCAtgt                                                                                   >  4:207685/1‑149 (MQ=255)                                                                                      ttttCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACAACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGc                                                               >  6:214396/1‑149 (MQ=255)                                                                                             tCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGc                                                                                                           <  1:156099/98‑1 (MQ=255)                                                                                             tCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGc                                                                                                           >  2:156099/1‑98 (MQ=255)                                                                                               aTGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTa                                                       <  8:213920/148‑1 (MQ=255)                                                                                                 gTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCGGTCTATTCCCTGGTAATGGCGTTGCAGGGTCATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTg                                                    >  2:213177/1‑149 (MQ=255)                                                                                                   tttCGTAGGTCAGGCCGGTAGTGAACGTGCCCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGAc                                                  >  4:121218/1‑149 (MQ=255)                                                                                                      cGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTg                                                <  5:188947/148‑1 (MQ=255)                                                                                                        tAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTa                                             <  5:10443/149‑1 (MQ=255)                                                                                                             cAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTTGTGCCATGGGTATTGACTGGTACTgg                                         <  3:207685/148‑1 (MQ=255)                                                                                                             acacaccgtggtgaactgggcgttccggtcacgttcacCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCAt                                                            <  8:162005‑M2/91‑1 (MQ=255)                                                                                                             acacaccgtggtgaactgggcgttccggtcacgttcacCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCAt                                                            >  7:162005‑M2/39‑129 (MQ=255)                                                                                                              aGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGt                                       >  2:686/1‑149 (MQ=255)                                                                                                                  cGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGtt                                   >  8:43962/1‑149 (MQ=255)                                                                                                                    gtggtgaactgggcgttccggtcacgttcacCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTaa                                                                         <  4:133790‑M2/78‑1 (MQ=255)                                                                                                                    gtggtgaactgggcgttccggtcacgttcacCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTaa                                                                         >  3:133790‑M2/32‑109 (MQ=255)                                                                                                                       GTGAACGTGATCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGGGGTGCCATGGGTATTGACTGGTACTGGGTCGTTtctc                               >  8:75901‑M1/1‑148 (MQ=255)                                                                                                                                         cccAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGTTCGTTTCTCGCTCTCCGGCATAcatca             >  8:198407/1‑148 (MQ=255)                                                                                                                                          ccAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTgtgg                                                                  >  8:91478/1‑94 (MQ=255)                                                                                                                                          ccAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTgtgg                                                                  <  7:91478/94‑1 (MQ=255)                                                                                                                                          ccAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGTTTCTCGCTCTCCGGCATACatcatc           <  5:214396/149‑1 (MQ=255)                                                                                                                                            tgttcacCACGGTGTGTCCAGCGTCTGTCTATTCCCTGGTAATGGCGTTGCAGTGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGTTTCTCGCTCTCCGGCATACatcatc           <  4:4230‑M2/140‑1 (MQ=255)                                                                                                                                            aGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCATGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGTTTCTCTCTCTCCGGCATACatcatc           >  3:4230/1‑147 (MQ=255)                                                                                                                                                 acCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGTTTCTCGCTCTCCGGCATACATCATCACACTCa    >  2:213284‑M2/3‑149 (MQ=255)                                                                                                                                                   cacGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGTTTCTCGCTCTCCGGCATACATCATCACACTCata  <  3:106641/149‑1 (MQ=255)                                                                                                                                                   cacGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCAGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGTTTCTCGCTCTCCGGCATACATCATCACACTCata  >  5:221350/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ATTGCGTTCGTCGCGACGCAACTCACCTTTTTGCCCGTACTCCGGCATGCCGCTATTCAGGCGGAAGTTATTGTAGCCCTTGCGGTTTTCACTCATGTTTTCGTAGTTCAGGCCGGTAGTGAACGTGACCGGAACGCCCAGTTCACCACGGTGTGTCCAGCGGCTGTCTATTCCCTGGTAATGGCGTTGCAGGGTAATCACGCCGCCCGCATGTGACGGGTTAAGTTGTGGTGCCATGGGTATTGACTGGTACTGGGTCGTTTCTCGCTCTCCGGCATACATCATCACACTCATA  >  NC_000913/1521890‑1522184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.