| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1170033 = | 80 (0.910) | 5 (0.060) | 5/256 | NT | 6.1% | coding (342/963 nt) | ldtC | L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913 | = 1340069 | 75 (0.860) | coding (740/765 nt) | pgpB | phosphatidylglycerophosphatase B | |||||
TCGGCTTTCTCGCTCTGTTACAGGCTAACCCCGGCGTTGATCCTTACGTACCGCGCGCGGGCAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGATGCGCCGCGCGAAGGCATTGTGATCAACATTGCGGAGCTGCGTCTCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1170181‑1170033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATTTCGCGATTTTCTTCCGCAGGTGGTGTTAATGGCCCACAAATTCGTTGCGCAAGCCACGTTGCCACCGCCACCAGCGCCCACGAAATCAACGTAGCTACTACCAGATCGCGTGGCCAATGC < NC_000913/1340069‑1339947 TCGGCTTTCTCGCTCTGTTACAGGCTAACCCCGGCGTTGATCCTTACGTACCGCGCGCGGGCAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGATGCGCCGCGCGAAGGCATTGTGATCAACATTGCGGAGCTGCGTCTCTAT > 1:262234/1‑149TCGGCTTTCTCGCTCTGTTACAGGCTAACCCCGGCGTTGATCCTTACGTACCGCGCGCGGGCAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGATGCGCCGCGCGAAGGCATTGTGATCAACATTGCGGAGCTGCGTCTCTAT < 6:190641/149‑1 CGTACCGCGCGCGGGGAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGATGCGCCGCGCGAAGGCATTGTGATCAACATTGCGGAGCTGCGTCTCTATATTTCGCGATTTTCTTCCGCAGGTGGTGTTAATGGCCCACAAATTC < 5:90307/149‑1 TTGCAAACCCTACTTCCAGATGCGCCGCGCGAAGGCATTGTGATCAACATTGCGGAGCTGCGTCTCTATATTTCGCGATTTTCTTCCGCAGGTGGTGTTAATGGCCCACAAATTCGTTGCGCAAGCCACGTTGCCACCGCCACCAGCGC > 2:273447/1‑149 TACTTCCAGATGCGCCGCGCGAAGGCATTGTGATCAACATTGCGGAGCTGCGTCTCTATATTTCGCGATTTTCTTCCGCAGGTGGTGTTAATGGCCCACAAATTCGTTGCGCAAGCCACGTTGCCACCGCCACCAGCGCCCACGAAAT > 4:243093/1‑148 ATCAACATTGCGGAGCTGCGTCTCTATATTTCGCGATTTTCTTCCGCAGGTGGTGTTAATGGCCCACAAATTCGTTGCGCAAGCCACGTTGCCACCGCCACCAGCGCCCACGAAATCAACGTAGCTACTACCAGATCGCGTGGCCAATG > 1:182601/1‑149 gCAACATTGCGGAGCTGCGTCTCTATATTTCGCGATTTTCTTCCGCAGGTGGTGTTAATGGCCCACAAATTCGTTGCGCAAGCCACGTTGCCACCGCCACCAGCGCCCACGAAATCAACGTAGCTACTACCAGATCGCGTGGCCAATGC < 4:32777/148‑1 TCGGCTTTCTCGCTCTGTTACAGGCTAACCCCGGCGTTGATCCTTACGTACCGCGCGCGGGCAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGATGCGCCGCGCGAAGGCATTGTGATCAACATTGCGGAGCTGCGTCTCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1170181‑1170033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATTTCGCGATTTTCTTCCGCAGGTGGTGTTAATGGCCCACAAATTCGTTGCGCAAGCCACGTTGCCACCGCCACCAGCGCCCACGAAATCAACGTAGCTACTACCAGATCGCGTGGCCAATGC < NC_000913/1340069‑1339947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |