breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT32.4% 46.5 / 25.3 34intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009133,728,7091.C26.7% 22.9 / 14.8 15coding (663/1455 nt)xylBxylulokinase
*NC_0009131,552,2700TG23.8% 44.3 / 11.3 21intergenic (+279/+128)fdnI/yddMformate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
*NC_0009132,460,6240AG23.1% 67.0 / 17.7 39intergenic (‑155/+26)fadI/yfcZbeta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein
*NC_0009131,552,2640AC21.7% 48.7 / 11.4 23intergenic (+273/+134)fdnI/yddMformate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
*NC_0009132,282,8310CG20.0% 69.9 / 13.6 31intergenic (+30/+109)rplY/yejK50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein

Marginal new junction evidence (lowest skew 10 of 61 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 423836446 (1.350)6 (0.190) 6/234 3.1 13.1% coding (731/2097 nt) yjbH DUF940 family extracellular polysaccharide protein
?NC_000913 = 4238390 37 (1.180)coding (757/2097 nt) yjbH DUF940 family extracellular polysaccharide protein
* ? NC_000913 274620 =NA (NA)6 (0.190) 6/236 3.1 NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 388340538 (1.110)6 (0.180) 6/242 3.2 14.6% coding (325/1404 nt) dnaA chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator
?NC_000913 = 3883413 34 (1.050)coding (317/1404 nt) dnaA chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator
* ? NC_000913 3597688 =65 (1.910)6 (0.180) 6/244 3.2 8.5% intergenic (‑128/‑296) livK/panM leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis
?NC_000913 3597710 = 66 (2.010)intergenic (‑150/‑274) livK/panM leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis
* ? NC_000913 = 19066550 (1.470)6 (0.180) 6/242 3.2 12.7% intergenic (+66/‑192) rpsB/tsf 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts
?NC_000913 = 190685 35 (1.080)intergenic (+86/‑172) rpsB/tsf 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts
* ? NC_000913 925857 =39 (1.140)6 (0.190)
+ACGGGCTTTTT
5/232 3.4 14.4% intergenic (+317/+27) clpA/serW ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
?NC_000913 1097195 = NA (NA)intergenic (+366/+370) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913 925857 =39 (1.140)6 (0.190)
+ACGGGCTTTTT
5/232 3.4 18.0% intergenic (+317/+27) clpA/serW ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
?NC_000913 1097014 = 21 (0.620)intergenic (+185/+551) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913 3470277 =NA (NA)5 (0.160) 5/240 3.5 NA coding (1053/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 3470311 = NA (NA)coding (1019/1185 nt) tufA translation elongation factor EF‑Tu 1
* ? NC_000913 = 249927638 (1.110)5 (0.160) 5/238 3.5 12.4% coding (606/1698 nt) ypdA sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system
?NC_000913 = 2499293 35 (1.100)coding (623/1698 nt) ypdA sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system
* ? NC_000913 4541922 =46 (1.350)5 (0.150) 5/246 3.6 10.6% intergenic (+363/‑115) fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
?NC_000913 4541952 = 40 (1.210)intergenic (+393/‑85) fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA