mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.4% | 46.5 / 25.3 | 34 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,728,709 | 1 | . | C | 26.7% | 22.9 / 14.8 | 15 | coding (663/1455 nt) | xylB | xylulokinase |
| * | NC_000913 | 1,552,270 | 0 | T | G | 23.8% | 44.3 / 11.3 | 21 | intergenic (+279/+128) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 2,460,624 | 0 | A | G | 23.1% | 67.0 / 17.7 | 39 | intergenic (‑155/+26) | fadI/yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| * | NC_000913 | 1,552,264 | 0 | A | C | 21.7% | 48.7 / 11.4 | 23 | intergenic (+273/+134) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 2,282,831 | 0 | C | G | 20.0% | 69.9 / 13.6 | 31 | intergenic (+30/+109) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| Marginal new junction evidence (lowest skew 10 of 61 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4238364 | 46 (1.350) | 6 (0.190) | 6/234 | 3.1 | 13.1% | coding (731/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein |
| ? | NC_000913 | = 4238390 | 37 (1.180) | coding (757/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.190) | 6/236 | 3.1 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3883405 | 38 (1.110) | 6 (0.180) | 6/242 | 3.2 | 14.6% | coding (325/1404 nt) | dnaA | chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator |
| ? | NC_000913 | = 3883413 | 34 (1.050) | coding (317/1404 nt) | dnaA | chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator | |||||
| * | ? | NC_000913 | 3597688 = | 65 (1.910) | 6 (0.180) | 6/244 | 3.2 | 8.5% | intergenic (‑128/‑296) | livK/panM | leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis |
| ? | NC_000913 | 3597710 = | 66 (2.010) | intergenic (‑150/‑274) | livK/panM | leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis | |||||
| * | ? | NC_000913 | = 190665 | 50 (1.470) | 6 (0.180) | 6/242 | 3.2 | 12.7% | intergenic (+66/‑192) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts |
| ? | NC_000913 | = 190685 | 35 (1.080) | intergenic (+86/‑172) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts | |||||
| * | ? | NC_000913 | 925857 = | 39 (1.140) | 6 (0.190) +ACGGGCTTTTT |
5/232 | 3.4 | 14.4% | intergenic (+317/+27) | clpA/serW | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser |
| ? | NC_000913 | 1097195 = | NA (NA) | intergenic (+366/+370) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 925857 = | 39 (1.140) | 6 (0.190) +ACGGGCTTTTT |
5/232 | 3.4 | 18.0% | intergenic (+317/+27) | clpA/serW | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser |
| ? | NC_000913 | 1097014 = | 21 (0.620) | intergenic (+185/+551) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 5 (0.160) | 5/240 | 3.5 | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 2499276 | 38 (1.110) | 5 (0.160) | 5/238 | 3.5 | 12.4% | coding (606/1698 nt) | ypdA | sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system |
| ? | NC_000913 | = 2499293 | 35 (1.100) | coding (623/1698 nt) | ypdA | sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system | |||||
| * | ? | NC_000913 | 4541922 = | 46 (1.350) | 5 (0.150) | 5/246 | 3.6 | 10.6% | intergenic (+363/‑115) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | NC_000913 | 4541952 = | 40 (1.210) | intergenic (+393/‑85) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA | |||||