New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3982351 =	16 (0.580)	4 (0.150)	4/254	3.0	18.9%	intergenic (+79/‑24)	yifK/argX	putative APC family amino acid transporter/tRNA‑Arg
	?	NC_000913	3982397 =	19 (0.720)					noncoding (23/77 nt)	argX	tRNA‑Arg
Rejected: Frequency below/above cutoff threshold.

TTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAAC  >  NC_000913/3982218‑3982496                                                                                                                                      |                                                                                                                                                  accaactgagctatagccaccactacaaatcttgttacgcggtattactaccaccgcagctcaagcgccgggactaaatggcgcgcccgacaggattcgaacctgagacctctgcctccggagggcagcgctcTATCCACCCCCGCAAc                                                                                                                                    <  8:98360‑M1/16‑1 (MQ=255)    taAAGTTTTTGGCCTTATTCGCCACGGTAAAGCGAATAAACTGGAGGAATAAGCACAAAAACGCACAAACCGTAACCAATCGCCCAATTTATTTAAAATGGGACTTCACATAGGGGTGGGAAGTCCGTATTATc                                                                                                                                                <  2:83345/134‑1 (MQ=255)    taAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATc                                                                                                                                                >  1:83345/1‑134 (MQ=255)                                  aGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATagag                                                                                                   <  6:64619/149‑1 (MQ=255)                                   ttacgcggtattactaccaccgcagctcaagcgccgggactaaatggcgcgcccgacaggattcgaacctgagacctctgcctccggagggcagcgctcTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgc                                                                                                  >  7:98360‑M1/100‑149 (MQ=255)                                                     accgcagctcaagcgccgggactaaatggcgcgcccgacaggattcgaacctgagacctctgcctccggagggcagcgctcTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGa                                                                                                        <  3:825‑M1/44‑1 (MQ=255)                                                     accgcagctcaagcgccgggactaaatggcgcgcccgacaggattcgaacctgagacctctgcctccggagggcagcgctcTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGa                                                                                                        >  4:825‑M1/82‑125 (MQ=255)                                                             aaaaCGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCa                                                                        <  2:135719/149‑1 (MQ=255)                                                                                  aaCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCagag                                                                              >  1:53039/1‑122 (MQ=255)                                                                                  aaCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCagag                                                                              <  2:53039/122‑1 (MQ=255)                                                                                                  aaaaaGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGgc                                   >  6:46170/1‑149 (MQ=255)                                                                                                    aaaGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGgcgc                                 >  5:132126/1‑149 (MQ=255)                                                                                                                    ggggTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGgta                 <  5:46170/149‑1 (MQ=255)                                                                                                                           gAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGc                           >  5:27718/1‑132 (MQ=255)                                                                                                                           gAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGc                           <  6:27718/132‑1 (MQ=255)                                                                                                                              gTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGtc                                                                           >  2:39641/1‑81 (MQ=255)                                                                                                                              gTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGtc                                                                           <  1:39641/81‑1 (MQ=255)                                                                                                                               tCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGgtag                <  5:15024/139‑1 (MQ=255)                                                                                                                               tCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGgtag                >  6:15024/1‑139 (MQ=255)                                                                                                                                   tattatCCACCCCCG‑AACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAAc  >  7:100659/1‑148 (MQ=255)                                                                                                                                      |                                                                                                                                                  TTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAAC  >  NC_000913/3982218‑3982496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.