| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3982351 = | 16 (0.580) | 4 (0.150) | 4/254 | 3.0 | 18.9% | intergenic (+79/‑24) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg |
| ? | NC_000913 | 3982397 = | 19 (0.720) | noncoding (23/77 nt) | argX | tRNA‑Arg | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTA > NC_000913/3982251‑3982530 | aGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATagag < 6:64619/149‑1 (MQ=255) ttacgcggtattactaccaccgcagctcaagcgccgggactaaatggcgcgcccgacaggattcgaacctgagacctctgcctccggagggcagcgctcTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgc > 7:98360‑M1/100‑149 (MQ=255) aaaaCGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCa < 2:135719/149‑1 (MQ=255) aaCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCagag > 1:53039/1‑122 (MQ=255) aaCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCagag < 2:53039/122‑1 (MQ=255) aaaaaGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGgc > 6:46170/1‑149 (MQ=255) aaaGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGgcgc > 5:132126/1‑149 (MQ=255) ggggTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGgta < 5:46170/149‑1 (MQ=255) gAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGc < 6:27718/132‑1 (MQ=255) gAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGc > 5:27718/1‑132 (MQ=255) gTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGtc < 1:39641/81‑1 (MQ=255) gTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGtc > 2:39641/1‑81 (MQ=255) tCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGgtag < 5:15024/139‑1 (MQ=255) tCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGgtag > 6:15024/1‑139 (MQ=255) gctctatccagctgagctacgggcgcttagcgccgttgcgggggtggataGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTaa > 7:98360‑M2/51‑149 (MQ=255) tattatCCACCCCCG‑AACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAAc > 7:100659/1‑148 (MQ=255) tccagctgagctacgggcgcttagcgccgttgcgggggtggataGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCggt > 4:825‑M2/45‑125 (MQ=255) tccagctgagctacgggcgcttagcgccgttgcgggggtggataGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCggt < 3:825‑M2/81‑1 (MQ=255) ACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTa > 7:58861‑M1/1‑139 (MQ=255) ACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTa < 8:58861‑M1/139‑1 (MQ=255) cccccGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGAttt > 5:128818/1‑147 (MQ=255) cccccGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGAttt < 6:128818/147‑1 (MQ=255) ccccGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTa > 2:122704/1‑149 (MQ=255) gcgcCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCa < 1:122704/149‑1 (MQ=255) gttgcgggggtggataGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGt < 8:98360‑M2/133‑1 (MQ=255) gCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTa > 3:110513/1‑147 (MQ=255) | AGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTA > NC_000913/3982251‑3982530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |