breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,366,8540TG26.5% 80.6 / 36.2 49intergenic (‑81/+37)dcuA/aspAC4‑dicarboxylate antiporter/aspartate ammonia‑lyase
*NC_0009134,366,8550CA26.5% 91.6 / 30.7 49intergenic (‑82/+36)dcuA/aspAC4‑dicarboxylate antiporter/aspartate ammonia‑lyase
*NC_0009134,296,0600CT26.0% 85.2 / 29.5 51intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009132,801,0560AT25.0% 51.9 / 18.3 32N31I (AAT→ATT) nrdINrdEF cluster assembly flavodoxin
*NC_0009132,356,7340GC24.0% 48.2 / 12.2 25intergenic (+23/‑170)glpC/yfaDanaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein
*NC_0009133,832,1880AT22.5% 76.1 / 19.8 40intergenic (+22/+31)yicH/yicIputative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
*NC_0009133,832,1910CG21.1% 86.8 / 20.4 38intergenic (+25/+28)yicH/yicIputative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
*NC_0009133,832,1940AT21.1% 78.5 / 14.9 38intergenic (+28/+25)yicH/yicIputative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase

Marginal new junction evidence (lowest skew 10 of 58 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 411453528 (0.760)8 (0.230) 7/236 3.2 24.2% intergenic (‑63/+34) fpr/glpX ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II
?NC_000913 = 4114539 24 (0.700)intergenic (‑67/+30) fpr/glpX ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II
* ? NC_000913 = 416856843 (1.160)5 (0.140) 5/240 4.0 11.0% intergenic (+121/‑73) gltT/rrlB tRNA‑Glu/23S ribosomal RNA of rrnB operon
?NC_000913 = 4168572 40 (1.140)intergenic (+125/‑69) gltT/rrlB tRNA‑Glu/23S ribosomal RNA of rrnB operon
* ? NC_000913 = 144044340 (1.080)5 (0.140) 5/240 4.0 11.8% coding (342/3525 nt) pfo pyruvate‑flavodoxin oxidoreductase
?NC_000913 = 1440464 37 (1.060)coding (321/3525 nt) pfo pyruvate‑flavodoxin oxidoreductase
* ? NC_000913 = 277706NA (NA)6 (0.170) 5/240 4.0 NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 270007734 (0.920)4 (0.120) 4/230 4.2 12.0% intergenic (+154/+40) yfhL/shoB putative 4Fe‑4S cluster‑containing protein/toxic membrane protein
?NC_000913 = 2700087 28 (0.830)intergenic (+164/+30) yfhL/shoB putative 4Fe‑4S cluster‑containing protein/toxic membrane protein
* ? NC_000913 = 455376136 (0.970)4 (0.120) 4/238 4.3 10.4% coding (861/1461 nt) uxuB D‑mannonate oxidoreductase, NAD‑dependent
?NC_000913 = 4553784 35 (1.010)coding (884/1461 nt) uxuB D‑mannonate oxidoreductase, NAD‑dependent
* ? NC_000913 = 420015539 (1.050)4 (0.120) 4/232 4.3 10.1% intergenic (+61/‑126) yjaG/hupA DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
?NC_000913 = 4200170 36 (1.060)intergenic (+76/‑111) yjaG/hupA DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
* ? NC_000913 4168332 =19 (0.510)5 (0.150) 4/234 4.3 29.0% intergenic (+132/‑40) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 4168374 = 7 (0.200)noncoding (3/76 nt) gltT tRNA‑Glu
* ? NC_000913 = 390790526 (0.700)4 (0.120) 4/238 4.3 14.4% coding (462/774 nt) pstB phosphate ABC transporter ATPase
?NC_000913 = 3907917 23 (0.660)coding (450/774 nt) pstB phosphate ABC transporter ATPase
* ? NC_000913 3618495 =48 (1.290)4 (0.120) 4/236 4.3 7.6% coding (720/807 nt) nikE nickel ABC transporter ATPase
?NC_000913 3618580 = 52 (1.510)coding (805/807 nt) nikE nickel ABC transporter ATPase