mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,366,854 | 0 | T | G | 26.5% | 80.6 / 36.2 | 49 | intergenic (‑81/+37) | dcuA/aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| * | NC_000913 | 4,366,855 | 0 | C | A | 26.5% | 91.6 / 30.7 | 49 | intergenic (‑82/+36) | dcuA/aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.0% | 85.2 / 29.5 | 51 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,801,056 | 0 | A | T | 25.0% | 51.9 / 18.3 | 32 | N31I (AAT→ATT) | nrdI | NrdEF cluster assembly flavodoxin |
| * | NC_000913 | 2,356,734 | 0 | G | C | 24.0% | 48.2 / 12.2 | 25 | intergenic (+23/‑170) | glpC/yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| * | NC_000913 | 3,832,188 | 0 | A | T | 22.5% | 76.1 / 19.8 | 40 | intergenic (+22/+31) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| * | NC_000913 | 3,832,191 | 0 | C | G | 21.1% | 86.8 / 20.4 | 38 | intergenic (+25/+28) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| * | NC_000913 | 3,832,194 | 0 | A | T | 21.1% | 78.5 / 14.9 | 38 | intergenic (+28/+25) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| Marginal new junction evidence (lowest skew 10 of 58 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4114535 | 28 (0.760) | 8 (0.230) | 7/236 | 3.2 | 24.2% | intergenic (‑63/+34) | fpr/glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| ? | NC_000913 | = 4114539 | 24 (0.700) | intergenic (‑67/+30) | fpr/glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II | |||||
| * | ? | NC_000913 | = 4168568 | 43 (1.160) | 5 (0.140) | 5/240 | 4.0 | 11.0% | intergenic (+121/‑73) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4168572 | 40 (1.140) | intergenic (+125/‑69) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 1440443 | 40 (1.080) | 5 (0.140) | 5/240 | 4.0 | 11.8% | coding (342/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase |
| ? | NC_000913 | = 1440464 | 37 (1.060) | coding (321/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | NC_000913 | = 277706 | NA (NA) | 6 (0.170) | 5/240 | 4.0 | NA | noncoding (32/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 277737 | NA (NA) | noncoding (63/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 2700077 | 34 (0.920) | 4 (0.120) | 4/230 | 4.2 | 12.0% | intergenic (+154/+40) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein |
| ? | NC_000913 | = 2700087 | 28 (0.830) | intergenic (+164/+30) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein | |||||
| * | ? | NC_000913 | = 4553761 | 36 (0.970) | 4 (0.120) | 4/238 | 4.3 | 10.4% | coding (861/1461 nt) | uxuB | D‑mannonate oxidoreductase, NAD‑dependent |
| ? | NC_000913 | = 4553784 | 35 (1.010) | coding (884/1461 nt) | uxuB | D‑mannonate oxidoreductase, NAD‑dependent | |||||
| * | ? | NC_000913 | = 4200155 | 39 (1.050) | 4 (0.120) | 4/232 | 4.3 | 10.1% | intergenic (+61/‑126) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | NC_000913 | = 4200170 | 36 (1.060) | intergenic (+76/‑111) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | NC_000913 | 4168332 = | 19 (0.510) | 5 (0.150) | 4/234 | 4.3 | 29.0% | intergenic (+132/‑40) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | 4168374 = | 7 (0.200) | noncoding (3/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 3907905 | 26 (0.700) | 4 (0.120) | 4/238 | 4.3 | 14.4% | coding (462/774 nt) | pstB | phosphate ABC transporter ATPase |
| ? | NC_000913 | = 3907917 | 23 (0.660) | coding (450/774 nt) | pstB | phosphate ABC transporter ATPase | |||||
| * | ? | NC_000913 | 3618495 = | 48 (1.290) | 4 (0.120) | 4/236 | 4.3 | 7.6% | coding (720/807 nt) | nikE | nickel ABC transporter ATPase |
| ? | NC_000913 | 3618580 = | 52 (1.510) | coding (805/807 nt) | nikE | nickel ABC transporter ATPase | |||||