New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3427078 =NA (NA)3 (0.040) 3/246 NT 100% noncoding (75/77 nt) ileU tRNA‑Ile
?NC_000913 = 4037236 0 (0.000)intergenic (+19/‑24) ileT/alaT tRNA‑Ile/tRNA‑Ala

ATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATC  >  NC_000913/3426940‑3427179
                                                                                                                                          |                                                                                                     
atgtaATCACTACAGAGATGGTGGAGCTCTGCGGGATCGAACCGCAGACCTCCTGCGGGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGTAGGCCTGa                                                                                              <  5:23647/145‑1 (MQ=0)
                                                                                           ccgaTAACATGTAGTTAAAACGTCTTCAAATTTGCAGTGCATATTTGGTTGGCCGGAGGGGACTTGAACCACGGACCTCTCCCTTATCATGGGTGCGCTCTAACGTCCTGAGCTTCAAGCCTGTAGAGGTTTTACTGCTCATTTtcatc  <  8:332086/146‑1 (MQ=1)
                                                                                                                                          |                                                                                                     
ATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATC  >  NC_000913/3426940‑3427179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.