New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3427078 =NA (NA)3 (0.040) 3/246 NT 100% noncoding (75/77 nt) ileU tRNA‑Ile
?NC_000913 = 4037236 0 (0.000)intergenic (+19/‑24) ileT/alaT tRNA‑Ile/tRNA‑Ala

TTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGG  >  NC_000913/4037089‑4037383
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tttGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTG                                                                                                                                                     <  7:164954‑M2/148‑1 (MQ=255)
  tGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTG                                                                                                                                                     <  8:23422‑M2/146‑1 (MQ=255)
                                                                                                         gtTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctg                                                                                      <  8:2875‑M2/106‑64 (MQ=255)
                                                                                                         gtTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctg                                                                                      >  7:2875‑M2/1‑43 (MQ=255)
                                                                                                                           cTACCAAATTTGCACGGCAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactg                          <  6:277715‑M2/148‑124 (MQ=255)
                                                                                                                                           gCAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttcttt          <  3:321664‑M2/148‑140 (MQ=255)
                                                                                                                                            taaatTTGgtaggcctgagtggacttggaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaa        >  7:44383‑M2/2‑8 (MQ=255)
                                                                                                                                            cAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaa        >  8:97199‑M2/1‑8 (MQ=255)
                                                                                                                                            cAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaa        >  4:160395‑M2/1‑8 (MQ=255)
                                                                                                                                            cAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggtttta                                                              >  7:107900‑M2/1‑8 (MQ=255)
                                                                                                                                            cAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggtttta                                                              <  8:107900‑M2/95‑88 (MQ=255)
                                                                                                                                            cAAATTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgcgataaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaa        >  6:180454‑M2/1‑8 (MQ=255)
                                                                                                                                             aaaTTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaag       >  5:88324‑M2/1‑7 (MQ=255)
                                                                                                                                             aaaTTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaag       <  8:271052‑M2/149‑143 (MQ=255)
                                                                                                                                             aaaTTTGgtaggcctgagtggacttgaacaaccgacctcacccttataaggggtgcgctctaaccacctgagctacaatcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtaagcttctttaag       >  2:62753‑M2/1‑7 (MQ=255)
                                                                                                                                              aaTTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaagg      >  6:22975‑M2/1‑6 (MQ=255)
                                                                                                                                              aaTTTGgtagccctgagtggacttgaaccaccgacctcacccataacagcgctgcgctctaaccacctgagctacaagcctggagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaag       <  6:70159‑M2/148‑143 (MQ=255)
                                                                                                                                               aTTTGgtagggctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgcgcactgcaaagtacgcttctttaagg      <  1:26280‑M2/148‑144 (MQ=255)
                                                                                                                                               aTTTGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaagg      <  1:322561‑M2/148‑144 (MQ=255)
                                                                                                                                                tttGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggta    >  7:40673‑M2/1‑4 (MQ=255)
                                                                                                                                                  tGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaa   >  2:328198‑M2/1‑2 (MQ=255)
                                                                                                                                                  tGgtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaa   >  1:310641‑M2/1‑2 (MQ=255)
                                                                                                                                                   ggtaggcctgagtggacttgaaccaccgacctcacccttatcaggggtgcgctctaaccacctgagctacaagcctgtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaag  >  7:19719‑M2/1‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGG  >  NC_000913/4037089‑4037383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.