breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913169,0150GA65.7% 112.7 / 98.5 105W511* (TGG→TAG) fhuAferrichrome outer membrane transporter
*NC_0009134,296,0600CT29.6% 142.6 / 74.3 98intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_000913169,0340CA28.3% 193.7 / 78.5 106Y517* (TAC→TAAfhuAferrichrome outer membrane transporter

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =37 (0.340)35 (0.360) 30/240 3.8 45.3% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 52 (0.540)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 1397238NA (NA)12 (0.110) 7/272 11.6 10.9% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 1802745 98 (0.890)intergenic (‑175/‑349) thrS/arpB threonyl‑tRNA synthetase/pseudogene, ankyrin repeats
* ? NC_000913 = 168600110 (1.000)6 (0.050) 6/272 12.2 5.2% coding (1117/2244 nt) fhuA ferrichrome outer membrane transporter
?NC_000913 = 279930 NA (NA)noncoding (1/768 nt) IS1 repeat region
* ? NC_000913 = 168600110 (1.000)6 (0.050) 6/272 12.2 5.2% coding (1117/2244 nt) fhuA ferrichrome outer membrane transporter
?NC_000913 = 258675 NA (NA)noncoding (1/768 nt) IS1 repeat region
* ? NC_000913 1742572 =140 (1.270)3 (0.030) 3/254 13.7 2.2% intergenic (+11/+29) cfa/ribC cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit
?NC_000913 1742595 = 138 (1.340)intergenic (+34/+6) cfa/ribC cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit
* ? NC_000913 = 3621309NA (NA)3 (0.030) 3/260 13.8 100% coding (2118/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3621344 0 (0.000)coding (2153/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3194547142 (1.290)3 (0.030) 3/260 13.8 2.1% intergenic (+22/+176) yqiK/sibD PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein
?NC_000913 = 3194562 147 (1.400)intergenic (+37/+161) yqiK/sibD PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein
* ? NC_000913 = 168600110 (1.000)3 (0.030) 3/272 14.2 2.7% coding (1117/2244 nt) fhuA ferrichrome outer membrane transporter
?NC_000913 1049778 = NA (NA)noncoding (1/768 nt) IS1 repeat region