mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 169,015 | 0 | G | A | 65.7% | 112.7 / 98.5 | 105 | W511* (TGG→TAG) | fhuA | ferrichrome outer membrane transporter |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.6% | 142.6 / 74.3 | 98 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 169,034 | 0 | C | A | 28.3% | 193.7 / 78.5 | 106 | Y517* (TAC→TAA) | fhuA | ferrichrome outer membrane transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 37 (0.340) | 35 (0.360) | 30/240 | 3.8 | 45.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 52 (0.540) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 12 (0.110) | 7/272 | 11.6 | 10.9% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1802745 | 98 (0.890) | intergenic (‑175/‑349) | thrS/arpB | threonyl‑tRNA synthetase/pseudogene, ankyrin repeats | |||||
| * | ? | NC_000913 | = 168600 | 110 (1.000) | 6 (0.050) | 6/272 | 12.2 | 5.2% | coding (1117/2244 nt) | fhuA | ferrichrome outer membrane transporter |
| ? | NC_000913 | = 279930 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 168600 | 110 (1.000) | 6 (0.050) | 6/272 | 12.2 | 5.2% | coding (1117/2244 nt) | fhuA | ferrichrome outer membrane transporter |
| ? | NC_000913 | = 258675 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 1742572 = | 140 (1.270) | 3 (0.030) | 3/254 | 13.7 | 2.2% | intergenic (+11/+29) | cfa/ribC | cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit |
| ? | NC_000913 | 1742595 = | 138 (1.340) | intergenic (+34/+6) | cfa/ribC | cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit | |||||
| * | ? | NC_000913 | = 3621309 | NA (NA) | 3 (0.030) | 3/260 | 13.8 | 100% | coding (2118/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3621344 | 0 (0.000) | coding (2153/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3194547 | 142 (1.290) | 3 (0.030) | 3/260 | 13.8 | 2.1% | intergenic (+22/+176) | yqiK/sibD | PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein |
| ? | NC_000913 | = 3194562 | 147 (1.400) | intergenic (+37/+161) | yqiK/sibD | PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein | |||||
| * | ? | NC_000913 | = 168600 | 110 (1.000) | 3 (0.030) | 3/272 | 14.2 | 2.7% | coding (1117/2244 nt) | fhuA | ferrichrome outer membrane transporter |
| ? | NC_000913 | 1049778 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||