New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3584195NA (NA)20 (0.550) 19/266 1.1 39.2% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 3731482 31 (0.850)coding (352/993 nt) xylF D‑xylose transporter subunit

GCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3584057‑3584195
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTT  <  NC_000913/3731482‑3731356
                                                                                                                                                                                                                                                                          
GCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCA                                                                                                                        >  5:22217/1‑148
      CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCATTAATCATACGGTC                                                                                                                 <  5:36954/149‑1
                            GCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGC                                                                                             <  6:22217/147‑1
                                     GGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTG                                                                                  <  5:118510/149‑1
                                                        TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTAC                                                               >  7:56779/1‑149
                                                          TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACT                                                              >  1:142362/1‑148
                                                               ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATAC                                                        >  3:21775/1‑149
                                                                         CTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTA                                              <  8:56779/149‑1
                                                                                    AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAAT                                   <  4:89859/149‑1
                                                                                    AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAAT                                   >  1:32073/1‑149
                                                                                        ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACA                               <  2:142362/149‑1
                                                                                                       AACATAAAACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGAC                    <  2:32073/145‑1
                                                                                                              AACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACG                                          <  2:155902/116‑1
                                                                                                              AACACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACG                                          >  1:155902/1‑116
                                                                                                                CACTATCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATC       <  4:21775/149‑1
                                                                                                                     TCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTT  >  2:36193/1‑149
                                                                                                                     TCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTT                                               >  7:29806/1‑104
                                                                                                                     TCAATAAGTTGGAGTCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTT                                               <  8:29806/104‑1
                                                                                                                                   TCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCG                      <  5:171514/115‑1
                                                                                                                                   TCATTACCCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCG                      >  6:171514/1‑115
                                                                                                                                                                                                                                                                          
GCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3584057‑3584195
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGTTACTTAATACCTGACCGTTATACGGAATAATGACAAGAACATCGACACCCCGGTTTATCATGTT  <  NC_000913/3731482‑3731356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.