mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.6% | 52.6 / 41.4 | 45 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,799,167 | 0 | A | C | 22.2% | 85.9 / 25.5 | 45 | intergenic (‑225/+59) | pheS/pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| * | NC_000913 | 1,799,168 | 0 | C | A | 22.2% | 101.8 / 24.5 | 45 | intergenic (‑226/+58) | pheS/pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| * | NC_000913 | 1,799,169 | 0 | T | G | 22.2% | 86.7 / 28.5 | 45 | intergenic (‑227/+57) | pheS/pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| * | NC_000913 | 1,799,170 | 0 | G | T | 22.2% | 98.3 / 20.7 | 45 | intergenic (‑228/+56) | pheS/pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| * | NC_000913 | 3,156,590 | 0 | C | A | 21.9% | 100.8 / 18.0 | 41 | intergenic (+72/‑33) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| * | NC_000913 | 3,156,591 | 0 | T | G | 21.9% | 82.6 / 21.8 | 41 | intergenic (+73/‑32) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| Marginal new junction evidence (lowest skew 10 of 64 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 114505 | 38 (0.900) | 7 (0.180) | 7/244 | 3.9 | 16.8% | intergenic (+18/+17) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| ? | NC_000913 | = 114511 | 35 (0.910) | intergenic (+24/+11) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 15 (0.370) | 7/256 | 4.1 | 100% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 0 (0.000) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 15 (0.370) | 7/256 | 4.1 | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2878320 = | 32 (0.760) | 6 (0.150) | 6/254 | 4.4 | 15.5% | intergenic (+702/+249) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | 2878338 = | 35 (0.880) | intergenic (+720/+231) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913 | = 2066832 | 6 (0.140) | 6 (0.150) | 5/250 | 4.8 | 51.7% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2102447 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2066832 | 6 (0.140) | 6 (0.150) | 5/250 | 4.8 | 68.2% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | 0 (0.000) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 5 (0.130) | 5/254 | 4.9 | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 4209893 | 4 (0.100) | 5 (0.130) | 4/246 | 5.2 | 57.7% | intergenic (+44/‑150) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| ? | NC_000913 | = 4209911 | NA (NA) | intergenic (+62/‑132) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 4168520 | 44 (1.050) | 5 (0.130) | 4/246 | 5.2 | 18.4% | intergenic (+73/‑121) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4209882 | 4 (0.100) | intergenic (+33/‑161) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3943554 | 4 (0.100) | 5 (0.130) | 4/246 | 5.2 | 18.6% | intergenic (+44/‑150) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4168509 | 40 (1.040) | intergenic (+62/‑132) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||